Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G288900.1 | Wheat | nucleus | 57.39 | 75.23 |
| TraesCS1A01G290300.1 | Wheat | cytosol | 58.42 | 74.56 |
| TraesCS2B01G383200.1 | Wheat | nucleus | 53.61 | 68.72 |
| Os04t0509200-01 | Rice | cytosol | 45.02 | 57.71 |
| OQU81934 | Sorghum | cytosol | 44.33 | 57.33 |
| Zm00001d003071_P001 | Maize | cytosol | 42.96 | 55.31 |
| GSMUA_Achr1P03500_001 | Banana | nucleus | 33.68 | 44.55 |
| KRG95442 | Soybean | cytosol | 19.59 | 40.14 |
| VIT_18s0122g01060.t01 | Wine grape | nucleus | 29.9 | 37.83 |
| PGSC0003DMT400003346 | Potato | nucleus | 27.84 | 37.16 |
| CDY31868 | Canola | cytosol | 27.49 | 36.53 |
| CDY33645 | Canola | nucleus | 26.8 | 36.45 |
| KRH67118 | Soybean | nucleus | 25.43 | 36.1 |
| CDY01355 | Canola | cytosol | 26.8 | 35.62 |
| Bra012248.1-P | Field mustard | cytosol | 26.8 | 35.62 |
| Bra016454.1-P | Field mustard | cytosol | 26.12 | 35.51 |
| AT1G20770.1 | Thale cress | nucleus | 26.12 | 35.35 |
| Solyc02g087940.2.1 | Tomato | nucleus | 21.65 | 34.24 |
| CDX96624 | Canola | nucleus | 21.65 | 32.81 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G299500.1 | EnsemblPlantsGene:TraesCS1B01G299500 | PANTHER:PTHR31996 | SEG:seg | TMHMM:TMhelix | MapMan:35.2 |
Description
No Description!
Coordinates
chr1B:-:520468820..520471927
Molecular Weight (calculated)
30802.9 Da
IEP (calculated)
5.141
GRAVY (calculated)
0.121
Length
291 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEVLQYLGP DRRAEGTTNA AAAEELVGDD EEILRFMDSA DGYLLLMDSL SAALRQGWLD LASARHSMGA SRVSSVLFDH KERSAVTKLQ VDYSADLQPS
101: EPKPHFALSK WCLQEESSSS GVICAQDSTK PKLRYRGSEA TPDGSNESDA TTAKSSTGAD ISSQVQTARS KALSVFGALV SPKLRTTQVS FESVVGAEAG
201: ATRCPLLRGH AVAPWQHEVA DGPDDLPLQL PPLQRGPLLL CAAVVADAAA AAVGVLHGST CVVLLLLLLL LLLLVCVCVL CLVPLLNVKR T
101: EPKPHFALSK WCLQEESSSS GVICAQDSTK PKLRYRGSEA TPDGSNESDA TTAKSSTGAD ISSQVQTARS KALSVFGALV SPKLRTTQVS FESVVGAEAG
201: ATRCPLLRGH AVAPWQHEVA DGPDDLPLQL PPLQRGPLLL CAAVVADAAA AAVGVLHGST CVVLLLLLLL LLLLVCVCVL CLVPLLNVKR T
001: MAEIYEEGDE SVDVNKESEV KTELGKGGGD ENVLQFLDSL DGYLTLMDSV NSKLREGWFD LASARHSMGT LRINSTLLDL KYHPASSTLQ VTDQDVESLG
101: SVPHFALSKW ASKGGSRKGK DFSTDTDSEI GSPLSPQLRH RGVSEEKPSA KDETVLAADE EIKKERAKSL SVFGGLVSPK LRGAQQSFET ALETLVEIAN
201: MRASMISAFE RITEK
101: SVPHFALSKW ASKGGSRKGK DFSTDTDSEI GSPLSPQLRH RGVSEEKPSA KDETVLAADE EIKKERAKSL SVFGGLVSPK LRGAQQSFET ALETLVEIAN
201: MRASMISAFE RITEK
Arabidopsis Description
At1g20770 [Source:UniProtKB/TrEMBL;Acc:Q9LM77]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.