Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G401200.2 | Wheat | nucleus | 95.98 | 95.98 |
| TraesCS3A01G369300.2 | Wheat | nucleus | 94.94 | 94.94 |
| TraesCS6D01G233000.5 | Wheat | nucleus | 86.67 | 86.07 |
| Os04t0550400-01 | Rice | nucleus | 65.52 | 64.48 |
| EER88892 | Sorghum | cytosol | 59.2 | 60.52 |
| Zm00001d014640_P035 | Maize | cytosol | 58.62 | 59.3 |
| GSMUA_Achr4P26970_001 | Banana | nucleus | 25.75 | 58.64 |
| Zm00001d036507_P003 | Maize | cytosol | 56.67 | 56.6 |
| GSMUA_Achr1P01610_001 | Banana | nucleus | 54.14 | 53.46 |
| GSMUA_Achr4P26960_001 | Banana | nucleus | 28.05 | 48.22 |
| VIT_15s0021g02140.t01 | Wine grape | nucleus | 47.36 | 46.92 |
| KRH30315 | Soybean | nucleus | 44.71 | 44.25 |
| Solyc11g013370.1.1 | Tomato | nucleus | 42.76 | 43.92 |
| KRH75261 | Soybean | nucleus | 44.37 | 43.86 |
| AT2G44950.1 | Thale cress | nucleus | 41.84 | 41.46 |
| Bra040332.1-P | Field mustard | nucleus | 41.38 | 40.96 |
| CDY37020 | Canola | nucleus | 41.15 | 40.82 |
| CDY18962 | Canola | nucleus | 40.92 | 40.78 |
| CDY27400 | Canola | nucleus | 40.8 | 40.66 |
| CDX74700 | Canola | nucleus | 41.03 | 40.52 |
| Bra004879.1-P | Field mustard | nucleus | 40.92 | 39.38 |
| TraesCS3D01G465000.1 | Wheat | nucleus | 6.55 | 34.55 |
| TraesCS3D01G462600.5 | Wheat | nucleus | 30.46 | 31.4 |
| TraesCS3D01G466100.1 | Wheat | nucleus | 30.34 | 31.28 |
| TraesCS3D01G465100.1 | Wheat | cytosol | 14.6 | 27.08 |
Protein Annotations
| MapMan:19.2.2.1.5.3.2 | Gene3D:3.30.40.10 | ncoils:Coil | InterPro:E3_ubiquit_lig_Bre1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010390 |
| GO:GO:0016043 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF13923 |
| ScanProsite:PS00518 | PFscan:PS50089 | PANTHER:PTHR23163 | PANTHER:PTHR23163:SF3 | SMART:SM00184 | SUPFAM:SSF57850 |
| SUPFAM:SSF57997 | EnsemblPlantsGene:TraesCS3D01G362300 | EnsemblPlants:TraesCS3D01G362300.2 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS |
| TIGR:cd16499 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr3D:-:476600495..476609578
Molecular Weight (calculated)
99197.6 Da
IEP (calculated)
7.297
GRAVY (calculated)
-0.734
Length
870 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSTGEPDQK RRLSDSFVSP AKRPALPPSS DDKKLDFAVL KYRNQKLSEQ LAVHKFEYHA LEGKFDDLKQ KQKAHHETQD LANKSWEHLV RDLKAISVCK
101: SGFQNPSCSA GPSNVSTDGA CIPKDKDFLS RLVETGATES SGCHLENHVH SSTTDVLQNI LFSSNASWHA NKKSLLDLFA ALPENERSRE LRTTGTELSL
201: QLNDAIQELS DLHLKHRRLT EKHHEERYLN TRSKAEQKRL KEELASAVAE LEESNHKLAV LKAQGDPTHG TPILFPTLGN KSLPEDNVRD KQKELQDLEA
301: CHKEFTDLIS QRLVEIRRLH EDRIEILNKL STFQNTLMDF KSISSSKAFQ VLKDQLQKSQ AELDHCRTLL EKLQVNKDKL IWQEREVNVK VDLSGIPHRV
401: SLNCESSIAV LKQNREKVVD EKNMLALKLE KSSREPGRNQ IISEFKALVS SLPGEMGAMQ TELSKCKDDA SELHSLRAEV HSVSDILARK EHTINESLCR
501: SADAGSETRD LRSRVCELRQ MNCELKLFVE MYKRDSTDSR DLLESKDREY CEWAHVHSLK SSLDESRLEQ RVKAAIEAEA MSQQRLASGE SEIAELRGKM
601: ESARRDIGSL SELLKSKHEE GEAYLSEIES IGQAYEDIQT QNQQLLQQII ERDDHNTKIF MEGVKVKHAQ DNLHLEVFNL SRNLRQAKSL MDLYKDKVAQ
701: LDDKLKVWSE QIGRLSEDGR RHSVSSGNSQ RKLVDVQGEA QQLRQSMDEV QAKVGRNRLE VAGLLVELEK DRFSKRRIED DLESMSRKAS SLRVKTEASS
801: LLEKVRQEVN EYRGILKCGV CSDRQKEVVI TKCYHLFCND CIQKLLRNRQ RRCPSCGLSF GANDVKPIYI
101: SGFQNPSCSA GPSNVSTDGA CIPKDKDFLS RLVETGATES SGCHLENHVH SSTTDVLQNI LFSSNASWHA NKKSLLDLFA ALPENERSRE LRTTGTELSL
201: QLNDAIQELS DLHLKHRRLT EKHHEERYLN TRSKAEQKRL KEELASAVAE LEESNHKLAV LKAQGDPTHG TPILFPTLGN KSLPEDNVRD KQKELQDLEA
301: CHKEFTDLIS QRLVEIRRLH EDRIEILNKL STFQNTLMDF KSISSSKAFQ VLKDQLQKSQ AELDHCRTLL EKLQVNKDKL IWQEREVNVK VDLSGIPHRV
401: SLNCESSIAV LKQNREKVVD EKNMLALKLE KSSREPGRNQ IISEFKALVS SLPGEMGAMQ TELSKCKDDA SELHSLRAEV HSVSDILARK EHTINESLCR
501: SADAGSETRD LRSRVCELRQ MNCELKLFVE MYKRDSTDSR DLLESKDREY CEWAHVHSLK SSLDESRLEQ RVKAAIEAEA MSQQRLASGE SEIAELRGKM
601: ESARRDIGSL SELLKSKHEE GEAYLSEIES IGQAYEDIQT QNQQLLQQII ERDDHNTKIF MEGVKVKHAQ DNLHLEVFNL SRNLRQAKSL MDLYKDKVAQ
701: LDDKLKVWSE QIGRLSEDGR RHSVSSGNSQ RKLVDVQGEA QQLRQSMDEV QAKVGRNRLE VAGLLVELEK DRFSKRRIED DLESMSRKAS SLRVKTEASS
801: LLEKVRQEVN EYRGILKCGV CSDRQKEVVI TKCYHLFCND CIQKLLRNRQ RRCPSCGLSF GANDVKPIYI
001: MASTGEPDRK RRHFSSISPS EAAAAVKKQP FFWPSSEDKL DTAVLQFQNL KLSQKLEAQQ VECSILEDKL SQIKEKQLPY NSSLKTVHKS WEKLTASVES
101: CSVRVSDSSS GAHRFVNKED GSSPAVKNDF INRLLETGAT ESSSSNICSN QMEENGVNTS SQMTQTLYNL VAATEDLRCL KDELYPTVLR TNLGKDLCGQ
201: LALSELESEI KSFRGDLDDV LVKFKSLSRE LQSHRDADAK VRVDLKRIRG ELEDEVVELQ QCNGDLSALR AERDATAGAF FPVLSLGNKL ATSDRERDKQ
301: RDLQDMETVL KELTVLASGR LQQLKNLHEE RTKMLGKMSN LQNKSKSVRC ISSSQACLSL KDQLEKSKEA VFQYMALLEK LQVEKDSIVW KEREINIKNE
401: LGDVSRKTSA VTDSRMASLD SEIQKQLDEK MRIKTRLGNI SRERGRKEIF ADMKALISSF PEEMSSMRSQ LNNYKETAGG IHSLRADVQS LSGVLCRKTK
501: EYEALQLRSA DYASQLGDLN ATVCDLKNSH EELKLFLDMY KRESTDARDI AEAKEQEYRA WAHVQSLKSS LDEQNLELRV KAANEAEAVS QQMLAAAEAE
601: IADLRQKMDD CKRDVAKHSD ILKSKHEEHG TYLSEIQTIG SAYEDIVPQN QQLLLQVTER DDYNIKLFLE GITSRQMQDT LLIDKYIMDK DIQQGSAYAS
701: FLSKKSSRIE DQLRFCTDQF QKLAEDKYQK SVSLENLQKK RADIGNGLEQ ARSRLEESHS KVEQSRLDYG ALELELEIER FNRRRIEEEM EIAKKKVSRL
801: RSLIEGSSAI QKLRQELSEF KEILKCKACN DRPKEVVITK CYHLFCNPCV QKLTGTRQKK CPTCSASFGP NDIKPIYI
101: CSVRVSDSSS GAHRFVNKED GSSPAVKNDF INRLLETGAT ESSSSNICSN QMEENGVNTS SQMTQTLYNL VAATEDLRCL KDELYPTVLR TNLGKDLCGQ
201: LALSELESEI KSFRGDLDDV LVKFKSLSRE LQSHRDADAK VRVDLKRIRG ELEDEVVELQ QCNGDLSALR AERDATAGAF FPVLSLGNKL ATSDRERDKQ
301: RDLQDMETVL KELTVLASGR LQQLKNLHEE RTKMLGKMSN LQNKSKSVRC ISSSQACLSL KDQLEKSKEA VFQYMALLEK LQVEKDSIVW KEREINIKNE
401: LGDVSRKTSA VTDSRMASLD SEIQKQLDEK MRIKTRLGNI SRERGRKEIF ADMKALISSF PEEMSSMRSQ LNNYKETAGG IHSLRADVQS LSGVLCRKTK
501: EYEALQLRSA DYASQLGDLN ATVCDLKNSH EELKLFLDMY KRESTDARDI AEAKEQEYRA WAHVQSLKSS LDEQNLELRV KAANEAEAVS QQMLAAAEAE
601: IADLRQKMDD CKRDVAKHSD ILKSKHEEHG TYLSEIQTIG SAYEDIVPQN QQLLLQVTER DDYNIKLFLE GITSRQMQDT LLIDKYIMDK DIQQGSAYAS
701: FLSKKSSRIE DQLRFCTDQF QKLAEDKYQK SVSLENLQKK RADIGNGLEQ ARSRLEESHS KVEQSRLDYG ALELELEIER FNRRRIEEEM EIAKKKVSRL
801: RSLIEGSSAI QKLRQELSEF KEILKCKACN DRPKEVVITK CYHLFCNPCV QKLTGTRQKK CPTCSASFGP NDIKPIYI
Arabidopsis Description
HUB1E3 ubiquitin-protein ligase BRE1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.