Factsheet for TraesCS7D01G452100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G095100.1
TraesCS5B01G101300.1
TraesCS5D01G107800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32980.1	TraesCS5A01G095100.1	AT5G11980.1	21798944
AT2G32980.1	TraesCS5B01G101300.1	AT5G11980.1	21798944
AT2G32980.1	TraesCS5D01G107800.1	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G365000.1	Wheat	cytosol	96.97	97.34
HORVU7Hr1G106630.1	Barley	cytosol	96.97	96.97
TraesCS7A01G464500.1	Wheat	cytosol	95.45	96.92
TraesCS7D01G451600.1	Wheat	cytosol	96.21	96.21
Os08t0204800-01	Rice	cytosol	92.05	92.05
EES14698	Sorghum	cytosol	89.39	88.72
Zm00001d024292_P002	Maize	cytosol	87.88	84.67
GSMUA_Achr3P29180_001	Banana	nucleus	77.27	71.83
Bra005537.1-P	Field mustard	cytosol	60.61	64.26
KRG91378	Soybean	cytosol	65.15	63.0
KRH35436	Soybean	cytosol	65.15	63.0
AT2G32980.1	Thale cress	nucleus	68.56	61.15
Solyc08g013990.2.1	Tomato	mitochondrion, nucleus	66.67	60.9
VIT_12s0059g01290.t01	Wine grape	nucleus	68.94	60.67
CDX84714	Canola	nucleus	67.42	60.14
Bra022916.1-P	Field mustard	nucleus	66.67	60.07
CDY19427	Canola	cytosol	64.39	59.65
CDY17122	Canola	cytosol	63.26	58.19
CDX79491	Canola	cytosol	67.42	56.51
GSMUA_Achr5P14990_001	Banana	plasma membrane	55.68	54.65

Protein Annotations

EnsemblPlants:TraesCS7D01G452100.1	EnsemblPlantsGene:TraesCS7D01G452100	GO:GO:0007049	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0031023	GO:GO:0051225	InterPro:HAUS2	ncoils:Coil	PANTHER:PTHR16039	PFAM:PF15003
MapMan:20.1.2.2.2	:	:	:	:	:

Description

No Description!

Coordinates

chr7D:+:571861881..571864859

Molecular Weight (calculated)

29225.6 Da

IEP (calculated)

5.013

GRAVY (calculated)

-0.430

Length

264 amino acids

Sequence
(BLAST)

001: MAAAQKPAKR LGGMAEALAI AGDLGFPAPP AQEDQNTSDK SDDLVRVLRE LTVVQRNIAN LQVELQGRKD DKNIAHLTHV SEMEKKCESL ARITAILKDV
101: IQNKDRIIAR LQQPYSLDCI PVEAEYQKQF SELLLKAASD YGALTASVGD FQWSQNFRES PAVWGEMLRP IPAALASCTR FFEAMSAMRE SFSTLQTLRV
201: GPSSLSMTPG GSSDDSKFLT PPQWREGSML NSWNQVDDVN PESDGLNSVN QRRLSWPSSI NRDL

Best Arabidopsis Sequence Match ( AT2G32980.1 )
(BLAST)

001: MSMGGDTTWV GKKPIRRIGG LSDALSIASD LGFAVAPPPS QEELQSFASS NGERGDDLIR VLRELSVVQR KIADLQVELQ GRKDDKNVAH LTHVGEMQKK
101: IETLSRITQI LKDVIQNKDR IIARLQQPYS LDCIPVEAEY QKQFSELLMK AASDYGALTA SVSDFQWSQN FKEPPSVWGE MLRPIPVALA SCTRFFEAMS
201: AMRESFATLQ ELRVGNSAVS LPTTPGGNEM THRDSDCVTP PQGRIESSFD DLAVHKTRRQ NNDQNEEEEE EEEEEDGNNN GNRRLSWPPS VKKSSV

Arabidopsis Description

AUG2AUGMIN subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:O48767]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.