Factsheet for Os08t0204800-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os12t0538300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32980.1	Os12t0538300-01	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G464000.1	Wheat	cytosol	92.8	92.8
TraesCS7D01G452100.1	Wheat	cytosol	92.05	92.05
TraesCS7D01G451600.1	Wheat	cytosol	92.05	92.05
HORVU7Hr1G106500.1	Barley	nucleus	92.05	92.05
TraesCS7B01G365000.1	Wheat	cytosol	91.29	91.64
TraesCS7A01G464500.1	Wheat	cytosol	90.15	91.54
TraesCS7B01G364500.1	Wheat	cytosol	91.29	91.29
HORVU7Hr1G106630.1	Barley	cytosol	91.29	91.29
EES14698	Sorghum	cytosol	90.53	89.85
Zm00001d024292_P002	Maize	cytosol	88.26	85.04
GSMUA_Achr3P29180_001	Banana	nucleus	76.89	71.48
Bra005537.1-P	Field mustard	cytosol	60.61	64.26
KRG91378	Soybean	cytosol	65.91	63.74
KRH35436	Soybean	cytosol	65.91	63.74
Solyc08g013990.2.1	Tomato	mitochondrion, nucleus	68.18	62.28
VIT_12s0059g01290.t01	Wine grape	nucleus	70.08	61.67
AT2G32980.1	Thale cress	nucleus	68.18	60.81
CDY19427	Canola	cytosol	65.53	60.7
CDX84714	Canola	nucleus	67.42	60.14
Bra022916.1-P	Field mustard	nucleus	66.67	60.07
CDY17122	Canola	cytosol	63.64	58.54
CDX79491	Canola	cytosol	67.42	56.51
GSMUA_Achr5P14990_001	Banana	plasma membrane	53.79	52.79

Protein Annotations

MapMan:20.1.2.2.2	EntrezGene:4344920	EMBL:AK064331	ProteinID:BAD05326.1	ProteinID:BAF23143.1	ProteinID:BAT04288.1
ncoils:Coil	ProteinID:EEE68225.1	GO:GO:0000278	GO:GO:0000911	GO:GO:0007020	GO:GO:0007049
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0031023	GO:GO:0051225	InterPro:HAUS2
EnsemblPlantsGene:Os08g0204800	EnsemblPlants:Os08t0204800-01	PFAM:PF15003	PANTHER:PTHR16039	UniProt:Q6ZCG3	UniParc:UPI000022F1DE
RefSeq:XP_015648602.1	:	:	:	:	:

Description

Conserved hypothetical protein. (Os08t0204800-01)

Coordinates

chr8:-:6112375..6115612

Molecular Weight (calculated)

29367.9 Da

IEP (calculated)

5.458

GRAVY (calculated)

-0.455

Length

264 amino acids

Sequence
(BLAST)

001: MAGVQKPAKR LGGMAEALSI AADLGFPAPP AQEDQGSSDK SDDLVRVLRE LTVVQRNIAN LQVELQGRKD DKNIAHLTHV SEMEKKCESL ARITTILKDV
101: IQNKDRIIAR LQQPYSLDCI PVEAEYQKQF SELLLKAASD YGALTASVGD FQWSQNFRES PAVWGEMLRP IPAALASCTR FFEAMSAMRE SFSTLQKLRV
201: GHSSLSMTPG GSSDDSKFLT PPQWREGSML DSWKQVDETI PESDGLDAIN QRRLSWPSSI KREQ

Best Arabidopsis Sequence Match ( AT2G32980.1 )
(BLAST)

001: MSMGGDTTWV GKKPIRRIGG LSDALSIASD LGFAVAPPPS QEELQSFASS NGERGDDLIR VLRELSVVQR KIADLQVELQ GRKDDKNVAH LTHVGEMQKK
101: IETLSRITQI LKDVIQNKDR IIARLQQPYS LDCIPVEAEY QKQFSELLMK AASDYGALTA SVSDFQWSQN FKEPPSVWGE MLRPIPVALA SCTRFFEAMS
201: AMRESFATLQ ELRVGNSAVS LPTTPGGNEM THRDSDCVTP PQGRIESSFD DLAVHKTRRQ NNDQNEEEEE EEEEEDGNNN GNRRLSWPPS VKKSSV

Arabidopsis Description

AUG2AUGMIN subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:O48767]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.