CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70438
CDX78461
CDX91181
CDY67814

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32980.1	CDX70438	AT5G11980.1	21798944
AT2G32980.1	CDX78461	AT5G11980.1	21798944
AT2G32980.1	CDX91181	AT5G11980.1	21798944
AT2G32980.1	CDY67814	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022916.1-P	Field mustard	nucleus	96.62	97.61
CDX79491	Canola	cytosol	98.31	92.38
AT2G32980.1	Thale cress	nucleus	87.5	87.5
CDY17122	Canola	cytosol	84.46	87.11
CDY19427	Canola	cytosol	83.78	87.02
VIT_12s0059g01290.t01	Wine grape	nucleus	78.04	77.0
Solyc08g013990.2.1	Tomato	mitochondrion, nucleus	73.65	75.43
KRG91378	Soybean	cytosol	68.24	73.99
KRH35436	Soybean	cytosol	67.57	73.26
TraesCS7A01G464500.1	Wheat	cytosol	59.8	68.08
TraesCS7B01G365000.1	Wheat	cytosol	60.14	67.68
Os08t0204800-01	Rice	cytosol	60.14	67.42
TraesCS7B01G364500.1	Wheat	cytosol	60.14	67.42
TraesCS7D01G452100.1	Wheat	cytosol	60.14	67.42
TraesCS7A01G464000.1	Wheat	cytosol	59.8	67.05
HORVU7Hr1G106630.1	Barley	cytosol	59.46	66.67
HORVU7Hr1G106500.1	Barley	nucleus	59.46	66.67
TraesCS7D01G451600.1	Wheat	cytosol	59.46	66.67
EES14698	Sorghum	cytosol	58.78	65.41
GSMUA_Achr3P29180_001	Banana	nucleus	62.5	65.14
Zm00001d024292_P002	Maize	cytosol	59.12	63.87
GSMUA_Achr5P14990_001	Banana	plasma membrane	48.65	53.53

Protein Annotations

EnsemblPlants:CDX84714	EnsemblPlantsGene:GSBRNA2T00141997001	GO:A0A078D8R1	GO:GO:0007049	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0031023	GO:GO:0051225	InterPro:HAUS2	PANTHER:PTHR16039	PFAM:PF15003
ProteinID:CDX84714	ProteinID:CDX84714.1	SEG:seg	UniParc:UPI0004EE0377	MapMan:20.1.2.2.2	:

Description

BnaA03g15160D

Coordinates

chrLK031838:-:886439..888820

Molecular Weight (calculated)

32789.4 Da

IEP (calculated)

4.878

GRAVY (calculated)

-0.580

Length

296 amino acids

Sequence
(BLAST)

001: MSMGSDSTWV GKKPIRRIGG FSDALSIASD LGYAVAPPPS QEELQSLASS NGEKGDDLIR VLRELSAVQR KIADFQVELQ GRKDDKNVAH LTHVSEMQKK
101: IETLSRITQI LKDVIQNKDR IIARLQQPYS LDCIPVEAEY QKQFSELLMK AASDYGALTA SVSDFQWSQN FKEPPSVWGE MLRPIPVALA SCTRFFEAMT
201: AMRESFATLQ DLRVGNSAAS LPTTPGSSET PHRDSDCVTP PQGRTDSSFD DFAVQATRRQ LHDQNEAEGE EDGNDNENAQ LDRRLSWPPS VKKSGV

Best Arabidopsis Sequence Match ( AT2G32980.1 )
(BLAST)

001: MSMGGDTTWV GKKPIRRIGG LSDALSIASD LGFAVAPPPS QEELQSFASS NGERGDDLIR VLRELSVVQR KIADLQVELQ GRKDDKNVAH LTHVGEMQKK
101: IETLSRITQI LKDVIQNKDR IIARLQQPYS LDCIPVEAEY QKQFSELLMK AASDYGALTA SVSDFQWSQN FKEPPSVWGE MLRPIPVALA SCTRFFEAMS
201: AMRESFATLQ ELRVGNSAVS LPTTPGGNEM THRDSDCVTP PQGRIESSFD DLAVHKTRRQ NNDQNEEEEE EEEEEDGNNN GNRRLSWPPS VKKSSV

Arabidopsis Description

AUG2AUGMIN subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:O48767]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.