Factsheet for Zm00001d024292_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d006805_P001
Zm00001d028871_P001
Zm00001d053677_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32980.1	Zm00001d006805_P001	AT5G11980.1	21798944
AT2G32980.1	Zm00001d028871_P001	AT5G11980.1	21798944
AT2G32980.1	Zm00001d053677_P001	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14698	Sorghum	cytosol	91.24	93.98
TraesCS7B01G365000.1	Wheat	cytosol	85.4	88.97
TraesCS7D01G451600.1	Wheat	cytosol	85.4	88.64
Os08t0204800-01	Rice	cytosol	85.04	88.26
TraesCS7D01G452100.1	Wheat	cytosol	84.67	87.88
HORVU7Hr1G106630.1	Barley	cytosol	84.67	87.88
TraesCS7B01G364500.1	Wheat	cytosol	84.31	87.5
TraesCS7A01G464000.1	Wheat	cytosol	84.31	87.5
TraesCS7A01G464500.1	Wheat	cytosol	82.85	87.31
HORVU7Hr1G106500.1	Barley	nucleus	83.58	86.74
GSMUA_Achr3P29180_001	Banana	nucleus	73.36	70.77
Bra005537.1-P	Field mustard	cytosol	58.39	64.26
KRH35436	Soybean	cytosol	62.77	63.0
KRG91378	Soybean	cytosol	62.41	62.64
Solyc08g013990.2.1	Tomato	mitochondrion, nucleus	63.87	60.55
VIT_12s0059g01290.t01	Wine grape	nucleus	65.69	60.0
AT2G32980.1	Thale cress	nucleus	64.23	59.46
CDY19427	Canola	cytosol	61.68	59.3
CDX84714	Canola	nucleus	63.87	59.12
Bra022916.1-P	Field mustard	nucleus	63.14	59.04
CDY17122	Canola	cytosol	60.22	57.49
CDX79491	Canola	cytosol	63.87	55.56
GSMUA_Achr5P14990_001	Banana	plasma membrane	51.82	52.79

Protein Annotations

EnsemblPlants:Zm00001d024292_P002	EnsemblPlants:Zm00001d024292_T002	EnsemblPlantsGene:Zm00001d024292	EntrezGene:100191214	GO:GO:0000278	GO:GO:0000911
GO:GO:0007020	GO:GO:0007049	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0031023
GO:GO:0051225	InterPro:HAUS2	ncoils:Coil	PANTHER:PTHR16039	PFAM:PF15003	ProteinID:AQK40955.1
SEG:seg	UniParc:UPI00084407AD	UniProt:A0A1D6IYK3	MapMan:20.1.2.2.2	:	:

Description

AUGMIN subunit 2

Coordinates

chr10:-:62317297..62320708

Molecular Weight (calculated)

30613.5 Da

IEP (calculated)

5.823

GRAVY (calculated)

-0.369

Length

274 amino acids

Sequence
(BLAST)

001: MAAAQPKPAK RLGGMAEALA IAADLGFPAS TTQEDQTSSD KSDDLVKVLR ELTVVQRNIA NLQVELQGRK VIFMKFCLPQ DDKNIAHLTH VSEMEKKCES
101: LARMTAILKD VIQNKDRIIA RLQQPYSLDC IPVEAEYQKQ FSELLLKAAS DYGALTASVG DFQWSQNFRE SPAVWGEMLR PIPAALASCT RFFEAMSAMR
201: ESFSTLQKLR VGHSSLSITP SDSSDDSKFL TPPQWRDGSI LDSWKQMDDI NLESSGIDAM NQRRLSWPSI KRDP

Best Arabidopsis Sequence Match ( AT2G32980.1 )
(BLAST)

001: MSMGGDTTWV GKKPIRRIGG LSDALSIASD LGFAVAPPPS QEELQSFASS NGERGDDLIR VLRELSVVQR KIADLQVELQ GRKDDKNVAH LTHVGEMQKK
101: IETLSRITQI LKDVIQNKDR IIARLQQPYS LDCIPVEAEY QKQFSELLMK AASDYGALTA SVSDFQWSQN FKEPPSVWGE MLRPIPVALA SCTRFFEAMS
201: AMRESFATLQ ELRVGNSAVS LPTTPGGNEM THRDSDCVTP PQGRIESSFD DLAVHKTRRQ NNDQNEEEEE EEEEEDGNNN GNRRLSWPPS VKKSSV

Arabidopsis Description

AUG2AUGMIN subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:O48767]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.