Factsheet for Bra005537.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra006136.1-P
Bra023354.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32980.1	Bra006136.1-P	AT5G11980.1	21798944
AT2G32980.1	Bra023354.1-P	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17122	Canola	cytosol	89.96	78.05
Bra022916.1-P	Field mustard	nucleus	83.13	70.65
AT2G32980.1	Thale cress	nucleus	83.13	69.93
Solyc08g013990.2.1	Tomato	mitochondrion, nucleus	73.9	63.67
VIT_12s0059g01290.t01	Wine grape	nucleus	75.5	62.67
KRG91378	Soybean	cytosol	68.27	62.27
KRH35436	Soybean	cytosol	67.47	61.54
TraesCS7A01G464500.1	Wheat	cytosol	63.86	61.15
Os08t0204800-01	Rice	cytosol	64.26	60.61
TraesCS7D01G452100.1	Wheat	cytosol	64.26	60.61
TraesCS7B01G364500.1	Wheat	cytosol	64.26	60.61
TraesCS7B01G365000.1	Wheat	cytosol	63.86	60.46
TraesCS7A01G464000.1	Wheat	cytosol	63.86	60.23
HORVU7Hr1G106630.1	Barley	cytosol	63.45	59.85
HORVU7Hr1G106500.1	Barley	nucleus	63.45	59.85
TraesCS7D01G451600.1	Wheat	cytosol	63.45	59.85
EES14698	Sorghum	cytosol	63.86	59.77
Zm00001d024292_P002	Maize	cytosol	64.26	58.39
GSMUA_Achr3P29180_001	Banana	nucleus	65.46	57.39
GSMUA_Achr5P14990_001	Banana	plasma membrane	50.2	46.47

Protein Annotations

EnsemblPlants:Bra005537.1	EnsemblPlants:Bra005537.1-P	EnsemblPlantsGene:Bra005537	GO:GO:0007049	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0031023	GO:GO:0051225	InterPro:HAUS2	PANTHER:PTHR16039	PFAM:PF15003
UniParc:UPI00025474F0	UniProt:M4CMU9	MapMan:20.1.2.2.2	:	:	:

Description

AT2G32980 (E=3e-110) | unknown protein

Coordinates

chrA05:+:6073102..6075104

Molecular Weight (calculated)

28054.2 Da

IEP (calculated)

5.432

GRAVY (calculated)

-0.455

Length

249 amino acids

Sequence
(BLAST)

001: MLFVCSIELQ TLASLNGERG DDLIRVLREL SSVQRKIADF QVELQGRKDD KNVAHLTHVC EMQKKIDTLS RITQILKDVI QNKDRIIARL QQPYSLDCIP
101: VEAEYQKQFS ELLMRAASDY GALTASVSDF QWSQNFKEPP SVWGEMLRPI PVALASCTRF FEAMSAMRES FATLQDLRVG NSAASLPTTP SQRDSDCVTP
201: PQGVTGSSFD DLAVQTTRRE AEEKNGNDYE NVHADRRLSW PPSVKKNNV

Best Arabidopsis Sequence Match ( AT2G32980.1 )
(BLAST)

001: MSMGGDTTWV GKKPIRRIGG LSDALSIASD LGFAVAPPPS QEELQSFASS NGERGDDLIR VLRELSVVQR KIADLQVELQ GRKDDKNVAH LTHVGEMQKK
101: IETLSRITQI LKDVIQNKDR IIARLQQPYS LDCIPVEAEY QKQFSELLMK AASDYGALTA SVSDFQWSQN FKEPPSVWGE MLRPIPVALA SCTRFFEAMS
201: AMRESFATLQ ELRVGNSAVS LPTTPGGNEM THRDSDCVTP PQGRIESSFD DLAVHKTRRQ NNDQNEEEEE EEEEEDGNNN GNRRLSWPPS VKKSSV

Arabidopsis Description

AUG2AUGMIN subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:O48767]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.