Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G122080.1 | Barley | cytosol | 89.8 | 89.07 |
| TraesCS5B01G552100.1 | Wheat | cytosol | 84.08 | 85.12 |
| TraesCS5B01G552300.1 | Wheat | cytosol | 78.78 | 79.75 |
| TraesCS5B01G552200.1 | Wheat | cytosol | 75.1 | 72.16 |
| TraesCS5B01G551900.1 | Wheat | cytosol | 73.47 | 70.59 |
| TraesCS5D01G538700.1 | Wheat | cytosol | 89.39 | 69.3 |
| EER90511 | Sorghum | cytosol | 68.57 | 67.2 |
| TraesCS5B01G451100.1 | Wheat | cytosol | 68.57 | 67.2 |
| Os03t0850700-01 | Rice | cytosol | 71.43 | 67.05 |
| Zm00001d012847_P001 | Maize | cytosol | 68.16 | 60.51 |
| TraesCS3B01G475000.1 | Wheat | cytosol | 57.14 | 56.91 |
| TraesCS3B01G475100.1 | Wheat | cytosol | 53.47 | 54.81 |
| VIT_01s0150g00170.t01 | Wine grape | cytosol | 53.06 | 52.85 |
| GSMUA_Achr4P15920_001 | Banana | cytosol | 55.51 | 51.71 |
| Bra032645.1-P | Field mustard | cytosol | 46.94 | 49.78 |
| KRH41051 | Soybean | cytosol | 49.39 | 48.79 |
| AT1G01630.1 | Thale cress | cytosol | 50.2 | 48.24 |
| VIT_17s0000g00130.t01 | Wine grape | cytosol | 49.8 | 47.66 |
| KRH54081 | Soybean | cytosol | 50.61 | 46.79 |
| Bra033247.1-P | Field mustard | cytosol | 48.57 | 46.67 |
| CDX90047 | Canola | cytosol | 48.57 | 46.67 |
| CDY15164 | Canola | cytosol | 48.57 | 46.67 |
| KRH63881 | Soybean | cytosol | 49.39 | 45.83 |
| Solyc03g118150.2.1 | Tomato | cytosol | 49.39 | 44.65 |
| PGSC0003DMT400036745 | Potato | cytosol | 48.98 | 44.28 |
| CDY38020 | Canola | cytosol | 46.94 | 43.89 |
| KRH59732 | Soybean | endoplasmic reticulum, golgi | 45.31 | 38.81 |
| Solyc06g068800.2.1 | Tomato | cytosol | 47.35 | 37.54 |
| PGSC0003DMT400065724 | Potato | cytosol | 47.35 | 37.54 |
| TraesCS4B01G055000.1 | Wheat | cytosol | 27.76 | 23.29 |
| TraesCS3B01G211200.1 | Wheat | nucleus | 27.35 | 22.19 |
| TraesCS4B01G055200.1 | Wheat | cytosol | 26.12 | 21.92 |
| TraesCS4B01G055100.1 | Wheat | cytosol | 24.9 | 21.55 |
| TraesCS7B01G089700.1 | Wheat | cytosol | 23.67 | 20.49 |
| TraesCS3B01G502500.1 | Wheat | cytosol, nucleus, plastid | 20.82 | 18.28 |
| TraesCS3B01G500500.1 | Wheat | cytosol, nucleus, plastid | 20.41 | 17.92 |
| TraesCS7B01G361800.2 | Wheat | mitochondrion, plastid | 20.0 | 16.01 |
| TraesCS6B01G331400.1 | Wheat | nucleus | 23.67 | 14.39 |
| TraesCS4B01G243300.1 | Wheat | cytosol | 24.08 | 13.05 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G552400.1 | EnsemblPlantsGene:TraesCS5B01G552400 | Gene3D:3.40.525.10 | InterPro:CRAL-TRIO_dom | InterPro:CRAL-TRIO_dom_sf | InterPro:CRAL/TRIO_N_dom |
| InterPro:CRAL/TRIO_N_dom_sf | InterPro:IPR001251 | InterPro:IPR036865 | PANTHER:PTHR10174 | PANTHER:PTHR10174:SF158 | PFAM:PF00650 |
| PFscan:PS50191 | SEG:seg | SMART:SM00516 | SMART:SM01100 | SUPFAM:SSF46938 | SUPFAM:SSF52087 |
| TIGR:cd00170 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr5B:-:703227339..703231553
Molecular Weight (calculated)
28432.0 Da
IEP (calculated)
8.199
GRAVY (calculated)
-0.575
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYSTEDEHQ HGHGHGDGDD AAEWKKVAEL RAVVEAQDPA AKEEDDFSLR RFLRARDHNI GKASAMLLQY LSWKRVAKPH GSISADEVRD EIAKDRVRMQ
101: GFDRLNRPMA YLYGARHFPA RRDLDEFKRY VTYVLDKICT RLPVGQEKFA AVIDMKGWGY ANCDIRGYVA ALEIMQGYYP ERLGRVFLIH VPYMFMAAWK
201: MVYPFIDDRT RKKFVFVTDK DLKSRLQGAI DESQLPEEYG GKLKL
101: GFDRLNRPMA YLYGARHFPA RRDLDEFKRY VTYVLDKICT RLPVGQEKFA AVIDMKGWGY ANCDIRGYVA ALEIMQGYYP ERLGRVFLIH VPYMFMAAWK
201: MVYPFIDDRT RKKFVFVTDK DLKSRLQGAI DESQLPEEYG GKLKL
001: MEESQELALT QLRKSVEKLS SSTEGYDKPT LMRFLVARSM DPVKAAKMFV DWQKWRASMV PPTGFIPESE VQDELEFRKV CLQGPTKSGH PLVLVITSKH
101: FASKDPANFK KFVVYALDKT IASGNNGKEV GGEKLVAVID LANITYKNLD ARGLITGFQF LQSYYPERLA KCYILHMPGF FVTVWKFVCR FLEKATQEKI
201: VIVTDGEEQR KFEEEIGADA LPEEYGGRAK LTAIQDVLLP QAAPVTLTNN NV
101: FASKDPANFK KFVVYALDKT IASGNNGKEV GGEKLVAVID LANITYKNLD ARGLITGFQF LQSYYPERLA KCYILHMPGF FVTVWKFVCR FLEKATQEKI
201: VIVTDGEEQR KFEEEIGADA LPEEYGGRAK LTAIQDVLLP QAAPVTLTNN NV
Arabidopsis Description
AT1G14820 protein [Source:UniProtKB/TrEMBL;Acc:B9DGS8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.