Factsheet for TraesCS7A01G001900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G120800.1
TraesCS1A01G339600.1
TraesCS1B01G140100.1
TraesCS1B01G351900.1
TraesCS1D01G121600.1
TraesCS1D01G341600.1
TraesCS3A01G274000.1
TraesCS3A01G313600.1
TraesCS3B01G158300.1
TraesCS3B01G307700.2
TraesCS3D01G140700.1
TraesCS3D01G273200.1
TraesCS4A01G498700.1
TraesCS5A01G389800.1
TraesCS5B01G394800.1
TraesCS5D01G399700.1
TraesCS6A01G251400.1
TraesCS6B01G273900.1
TraesCS6D01G233200.1
TraesCS7A01G001900.1
TraesCS7D01G001600.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54850.1	TraesCS5A01G389800.1	AT1G04130.1	21798944
AT3G54850.1	TraesCS5B01G394800.1	AT1G04130.1	21798944
AT3G54850.1	TraesCS5D01G399700.1	AT1G04130.1	21798944
AT3G54850.1	TraesCS6A01G251400.1	AT3G48150.1	21798944
AT3G54850.1	TraesCS6B01G273900.1	AT3G48150.1	21798944
AT3G54850.1	TraesCS6D01G233200.1	AT3G48150.1	21798944
AT3G54850.1	TraesCS4A01G498700.1	AT3G54850.1	21798944
AT3G54850.1	TraesCS7A01G001900.1	AT3G54850.1	21798944
AT3G54850.1	TraesCS7D01G001600.2	AT3G54850.1	21798944
AT3G54850.1	TraesCS1A01G120800.1	AT4G39470.1	21798944
AT3G54850.1	TraesCS1B01G140100.1	AT4G39470.1	21798944
AT3G54850.1	TraesCS1D01G121600.1	AT4G39470.1	21798944
AT3G54850.1	TraesCS1A01G339600.1	AT5G58950.1	21798944
AT3G54850.1	TraesCS1B01G351900.1	AT5G58950.1	21798944
AT3G54850.1	TraesCS1D01G341600.1	AT5G58950.1	21798944
AT3G54850.1	TraesCS3A01G274000.1	AT5G58950.1	21798944
AT3G54850.1	TraesCS3A01G313600.1	AT5G58950.1	21798944
AT3G54850.1	TraesCS3B01G158300.1	AT5G58950.1	21798944
AT3G54850.1	TraesCS3B01G307700.2	AT5G58950.1	21798944
AT3G54850.1	TraesCS3D01G140700.1	AT5G58950.1	21798944
AT3G54850.1	TraesCS3D01G273200.1	AT5G58950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G001600.2	Wheat	cytosol, plastid	98.68	86.88
HORVU7Hr1G000780.1	Barley	cytosol	96.23	86.44
TraesCS4A01G498700.1	Wheat	plastid	98.87	82.78
Os06t0102700-01	Rice	plasma membrane	84.91	74.5
EER87680	Sorghum	cytosol	83.4	73.54
Zm00001d045632_P004	Maize	cytosol, mitochondrion	83.02	69.84
KRH04403	Soybean	mitochondrion	43.77	64.09
VIT_13s0019g04710.t01	Wine grape	cytosol	66.04	55.73
PGSC0003DMT400019235	Potato	cytosol	63.58	54.01
Solyc11g008390.1.1	Tomato	cytosol	63.21	53.69
KRH34817	Soybean	cytosol	63.02	52.85
KRG91959	Soybean	cytosol	62.83	52.77
AT3G54850.1	Thale cress	cytosol	61.32	51.42
Bra007105.1-P	Field mustard	cytosol	61.32	51.26
CDX78273	Canola	cytosol	61.13	51.1
GSMUA_Achr3P00280_001	Banana	cytosol	57.74	50.75
GSMUA_Achr1P24290_001	Banana	cytosol	54.91	47.63
TraesCS5A01G078400.1	Wheat	cytosol	55.66	43.13
TraesCS4A01G097700.1	Wheat	cytosol	52.45	38.88
TraesCS6A01G293600.1	Wheat	cytosol	44.91	37.13
CDX73439	Canola	plastid	61.32	36.07
TraesCS2A01G193000.1	Wheat	cytosol	23.58	34.63
TraesCS7A01G549700.1	Wheat	cytosol	40.94	33.59
TraesCS7A01G293900.1	Wheat	cytosol	40.19	33.07
TraesCS3A01G390200.1	Wheat	cytosol	26.04	31.44
TraesCS2A01G276400.1	Wheat	nucleus	25.66	29.57
TraesCS2A01G190800.1	Wheat	cytosol	23.21	28.21
TraesCS6A01G190700.1	Wheat	plastid	33.4	24.41
TraesCS1A01G300000.1	Wheat	cytosol	30.75	24.4
TraesCS3A01G410100.1	Wheat	cytosol	24.34	24.39
TraesCS3A01G521300.1	Wheat	cytosol	37.55	23.95
TraesCS3A01G410000.1	Wheat	cytosol	28.3	23.66
TraesCS3A01G345800.1	Wheat	plastid	30.19	23.43
TraesCS2A01G475600.1	Wheat	cytosol, plasma membrane	29.06	22.29
TraesCS5A01G198800.1	Wheat	cytosol, plasma membrane	26.6	20.11

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514
PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF111	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS7A01G001900	EnsemblPlants:TraesCS7A01G001900.1	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	TIGR:cd16664	:	:	:	:

Description

No Description!

Coordinates

chr7A:-:1320275..1322055

Molecular Weight (calculated)

57163.6 Da

IEP (calculated)

5.562

GRAVY (calculated)

-0.206

Length

530 amino acids

Sequence
(BLAST)

001: MRGRDSLLRE FAAVNEQIQA ALDQLPYHDF DMPEEVQEQV ALVHSQFKRA ATRAEPADAQ LARDLAWALS DDKPTVPALL MRVSEKLQLE TMADMKRESV
101: ALHEMVISSG GEPEGCVDEM SSLLKKLKDC VIAQAPSAEG PGVGRSPSVK SPIIPDEFRC PISLELMQDP VIVSSGQTYE RSCIQKWLDS GHKTCPKTQL
201: ALTHTSLTPN FVLKSLIAQW CEANGIELPK NKANSHDKKA VKSSDYDNAG LISLMNRLRG GNQDEQRAAA GEIRLLAKRN VNNRICIAEA GAIPLLVNLL
301: SSSDPRTQEH AVTALLNLSI HENNKASIVD SNAIPKIVEV LKTGSMEARE NAAATLFSLS VVDENKVTIG AAGAIPPLIN LLCDGSPRGK KDAATAIFNL
401: CIYQGNKVRA VKAGIITHLM NFLVDPTGGM IDEALTLLSI LAGNQEGKSV ITQSEPMPPL VEVIKTGSPR NRENAAAILW SLCSADAEQT MAAKAAGGED
501: ALKELSETGT DRAKRKASSL LELMRQSEEA

Best Arabidopsis Sequence Match ( AT3G54850.1 )
(BLAST)

001: MGLTNCCSHE ELMSRLVDSV KEISGFSSSR GFIGKIQGDL VRRITLLSPF FEELIDVNVE LKKDQITGFE AMRIALDSSL ELFRSVNGGS KLFQLFDRDS
101: LVEKFRDMTV EIEAALSQIP YEKIEVSEEV REQVQLLHFQ FKRAKERWEE SDLQLSHDLA MAENVMDPDP IILKRLSQEL QLTTIDELKK ESHAIHEYFL
201: SYDGDPDDCF ERMSSLLKNL VDFVTMESSD PDPSTGSRIV SRHRSPVIPE YFRCPISLEL MKDPVIVSTG QTYERSSIQK WLDAGHKTCP KSQETLLHAG
301: LTPNYVLKSL IALWCESNGI ELPQNQGSCR TTKIGGSSSS DCDRTFVLSL LEKLANGTTE QQRAAAGELR LLAKRNVDNR VCIAEAGAIP LLVELLSSPD
401: PRTQEHSVTA LLNLSINEGN KGAIVDAGAI TDIVEVLKNG SMEARENAAA TLFSLSVIDE NKVAIGAAGA IQALISLLEE GTRRGKKDAA TAIFNLCIYQ
501: GNKSRAVKGG IVDPLTRLLK DAGGGMVDEA LAILAILSTN QEGKTAIAEA ESIPVLVEII RTGSPRNREN AAAILWYLCI GNIERLNVAR EVGADVALKE
601: LTENGTDRAK RKAASLLELI QQTEGVAVTT VP

Arabidopsis Description

PUB14U-box domain-containing protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.