CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87680
EES07517
KXG22364
KXG31606
OQU77561
OQU80422
OQU87530
OQU90987

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54850.1	OQU90987	AT1G04130.1	21798944
AT3G54850.1	EES07517	AT3G48150.1	21798944
AT3G54850.1	EER87680	AT3G54850.1	21798944
AT3G54850.1	OQU77561	AT4G39470.1	21798944
AT3G54850.1	KXG22364	AT5G58950.1	21798944
AT3G54850.1	KXG31606	AT5G58950.1	21798944
AT3G54850.1	OQU80422	AT5G58950.1	21798944
AT3G54850.1	OQU87530	AT5G58950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045632_P004	Maize	cytosol, mitochondrion	95.51	91.11
Os06t0102700-01	Rice	plasma membrane	84.53	84.11
TraesCS7A01G001900.1	Wheat	cytosol	73.54	83.4
TraesCS7D01G001600.2	Wheat	cytosol, plastid	82.03	81.89
HORVU7Hr1G000780.1	Barley	cytosol	79.37	80.85
TraesCS4A01G498700.1	Wheat	plastid	80.03	75.99
KRH04403	Soybean	mitochondrion	38.94	64.64
VIT_13s0019g04710.t01	Wine grape	cytosol	63.06	60.35
PGSC0003DMT400019235	Potato	cytosol	60.9	58.65
Solyc11g008390.1.1	Tomato	cytosol	60.9	58.65
KRG91959	Soybean	cytosol	60.9	58.0
KRH34817	Soybean	cytosol	60.73	57.75
GSMUA_Achr3P00280_001	Banana	cytosol	56.57	56.38
CDX78273	Canola	cytosol	58.4	55.36
Bra007105.1-P	Field mustard	cytosol	58.07	55.05
AT3G54850.1	Thale cress	cytosol	57.57	54.75
GSMUA_Achr1P24290_001	Banana	cytosol	55.57	54.66
OQU79384	Sorghum	cytosol	53.24	48.05
OQU92820	Sorghum	cytosol	52.25	41.92
EES07310	Sorghum	cytosol	41.43	39.03
CDX73439	Canola	plastid	58.4	38.96
KXG20946	Sorghum	cytosol	40.27	37.64
EES15482	Sorghum	cytosol	39.77	37.17
EER97464	Sorghum	cytosol	21.46	35.64
EES06804	Sorghum	cytosol	27.45	35.56
EER97453	Sorghum	plastid	21.63	27.78
EES04812	Sorghum	plastid	33.11	27.3
OQU78182	Sorghum	plastid	30.62	27.1
EES01872	Sorghum	cytosol	35.77	26.71
KXG33626	Sorghum	plastid	30.12	25.78
OQU80426	Sorghum	endoplasmic reticulum, plasma membrane	29.62	24.93
EES14396	Sorghum	cytosol	38.27	22.84
KXG35540	Sorghum	plasma membrane	27.12	22.77

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	EntrezGene:8065353	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	UniProt:C5Z221	ncoils:Coil	EnsemblPlants:EER87680	ProteinID:EER87680	ProteinID:EER87680.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005102	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0070696	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514
PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF111	SMART:SM00185
SMART:SM00504	EnsemblPlantsGene:SORBI_3010G000900	SUPFAM:SSF48371	SUPFAM:SSF57850	unigene:Sbi.2392	UniParc:UPI0001A894A9
InterPro:Ubox_domain	RefSeq:XP_002436313.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:+:83990..86626

Molecular Weight (calculated)

64966.5 Da

IEP (calculated)

7.342

GRAVY (calculated)

-0.123

Length

601 amino acids

Sequence
(BLAST)

001: MPARVAAEIA ALPEPRGPMR RLCGDLTRRI RLLAPLFQHL QDRGDALLLA DALGAARDLL RAVHDGSKIY QAMQGDAVLQ RFATVNRHIH LALDALPYQT
101: FDMPEEVLEQ VDLVHSQFKR AATTVAPPDA QLSKDICSAL ADKAFDPRVL TRISDKLQLH TMADIKKESL ALHEMVISSG GEPDGCVEEM SSLLKKLKDC
201: VVTEAPTTET LSTRSASIKH TSPIIPDEFR CPISLELMQD PVIVSSGQTY ERSCIQKWLD SGHKTCPKTQ QLLSHTSLTP NFVLKSLIAQ WCEANGIELP
301: KNKANSRDKK AAKSSDYDHA GLVSLMNRLR SGSQDEQRAA AGEIRLLAKR NVNNRICIAE AGAIPLLVNL LSSSDPRTQE HAVTALLNLS IHENNKANIV
401: SSHAIPKIVE VLKTGSMEAR ENAAATLFSL SVVDENKVTI GGAGAIPPLI NLLCDGSPRG KKDAATAIFN LCIYQGNKIR AVKAGIVIHL MNFLVDPTGG
501: MIDEALTLLA ILAGNPEAKA VIAQSDPIPP LVEVIKTGSP RNRENAAAVL WSLCCTAVEQ TRAAKAAGAE DALKELSDSG TERAKRKASS ILELMRQAEE
601: A

Best Arabidopsis Sequence Match ( AT3G54850.1 )
(BLAST)

001: MGLTNCCSHE ELMSRLVDSV KEISGFSSSR GFIGKIQGDL VRRITLLSPF FEELIDVNVE LKKDQITGFE AMRIALDSSL ELFRSVNGGS KLFQLFDRDS
101: LVEKFRDMTV EIEAALSQIP YEKIEVSEEV REQVQLLHFQ FKRAKERWEE SDLQLSHDLA MAENVMDPDP IILKRLSQEL QLTTIDELKK ESHAIHEYFL
201: SYDGDPDDCF ERMSSLLKNL VDFVTMESSD PDPSTGSRIV SRHRSPVIPE YFRCPISLEL MKDPVIVSTG QTYERSSIQK WLDAGHKTCP KSQETLLHAG
301: LTPNYVLKSL IALWCESNGI ELPQNQGSCR TTKIGGSSSS DCDRTFVLSL LEKLANGTTE QQRAAAGELR LLAKRNVDNR VCIAEAGAIP LLVELLSSPD
401: PRTQEHSVTA LLNLSINEGN KGAIVDAGAI TDIVEVLKNG SMEARENAAA TLFSLSVIDE NKVAIGAAGA IQALISLLEE GTRRGKKDAA TAIFNLCIYQ
501: GNKSRAVKGG IVDPLTRLLK DAGGGMVDEA LAILAILSTN QEGKTAIAEA ESIPVLVEII RTGSPRNREN AAAILWYLCI GNIERLNVAR EVGADVALKE
601: LTENGTDRAK RKAASLLELI QQTEGVAVTT VP

Arabidopsis Description

PUB14U-box domain-containing protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.