Factsheet for GSMUA_Achr3P00280_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P24290_001
GSMUA_Achr2P15610_001
GSMUA_Achr3P00280_001
GSMUA_Achr3P25620_001
GSMUA_Achr4P30980_001
GSMUA_Achr6P00760_001
GSMUA_Achr6P26170_001
GSMUA_Achr9P05820_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54850.1	GSMUA_Achr3P25620_001	AT1G04130.1	21798944
AT3G54850.1	GSMUA_Achr11P...	AT3G48150.1	21798944
AT3G54850.1	GSMUA_Achr1P24290_001	AT3G54850.1	21798944
AT3G54850.1	GSMUA_Achr3P00280_001	AT3G54850.1	21798944
AT3G54850.1	GSMUA_Achr6P00760_001	AT4G39470.1	21798944
AT3G54850.1	GSMUA_Achr10P...	AT5G58950.1	21798944
AT3G54850.1	GSMUA_Achr2P15610_001	AT5G58950.1	21798944
AT3G54850.1	GSMUA_Achr4P30980_001	AT5G58950.1	21798944
AT3G54850.1	GSMUA_Achr6P26170_001	AT5G58950.1	21798944
AT3G54850.1	GSMUA_Achr9P05820_001	AT5G58950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P24290_001	Banana	cytosol	75.62	74.63
VIT_13s0019g04710.t01	Wine grape	cytosol	61.53	59.08
TraesCS7A01G001900.1	Wheat	cytosol	50.75	57.74
HORVU7Hr1G000780.1	Barley	cytosol	55.89	57.12
PGSC0003DMT400019235	Potato	cytosol	59.04	57.05
Solyc11g008390.1.1	Tomato	cytosol	58.87	56.89
TraesCS7D01G001600.2	Wheat	cytosol, plastid	56.72	56.81
KRH04403	Soybean	mitochondrion	34.0	56.63
EER87680	Sorghum	cytosol	56.38	56.57
Os06t0102700-01	Rice	plasma membrane	56.05	55.96
KRG91959	Soybean	cytosol	58.21	55.63
KRH34817	Soybean	cytosol	57.38	54.75
Zm00001d045632_P004	Maize	cytosol, mitochondrion	56.22	53.81
AT3G54850.1	Thale cress	cytosol	56.22	53.64
Bra007105.1-P	Field mustard	cytosol	55.39	52.68
CDX78273	Canola	cytosol	55.39	52.68
TraesCS4A01G498700.1	Wheat	plastid	55.22	52.61
GSMUA_Achr10P...	Banana	cytosol	48.92	47.12
GSMUA_Achr6P34170_001	Banana	cytosol	49.25	44.73
GSMUA_Achr5P07140_001	Banana	cytosol	44.94	43.15
GSMUA_Achr5P28670_001	Banana	cytosol	40.3	42.63
GSMUA_Achr4P05030_001	Banana	cytosol	32.84	37.79
CDX73439	Canola	plastid	55.22	36.96
GSMUA_Achr9P12570_001	Banana	cytosol	18.24	36.67
GSMUA_Achr4P04900_001	Banana	cytosol	31.34	35.8
GSMUA_Achr10P...	Banana	cytosol	50.75	35.42
GSMUA_Achr8P25140_001	Banana	plastid	24.54	35.24
GSMUA_Achr9P15600_001	Banana	cytosol	39.14	34.91
GSMUA_Achr6P06560_001	Banana	cytosol	20.23	32.71
GSMUA_Achr10P...	Banana	cytosol	19.9	32.09
GSMUA_Achr4P01530_001	Banana	plasma membrane	32.01	31.59
GSMUA_Achr9P01670_001	Banana	cytosol	24.38	31.55
GSMUA_Achr4P03430_001	Banana	cytosol	13.93	31.23
GSMUA_Achr6P36530_001	Banana	cytosol	33.0	30.15
GSMUA_Achr2P15530_001	Banana	mitochondrion	32.34	29.55
GSMUA_Achr6P07710_001	Banana	cytosol	17.25	29.13
GSMUA_Achr3P18890_001	Banana	cytosol	17.25	28.97
GSMUA_Achr10P...	Banana	mitochondrion	21.56	28.76
GSMUA_Achr7P22130_001	Banana	cytosol	29.68	28.28
GSMUA_Achr10P...	Banana	cytosol	17.08	27.69
GSMUA_Achr9P28820_001	Banana	mitochondrion	26.37	26.54
GSMUA_Achr4P10960_001	Banana	endoplasmic reticulum	17.74	26.35
GSMUA_Achr4P14130_001	Banana	cytosol	15.09	26.22
GSMUA_Achr5P21360_001	Banana	cytosol	33.0	26.22
GSMUA_Achr4P00200_001	Banana	plastid	30.51	26.14
GSMUA_Achr4P06990_001	Banana	plastid	17.41	26.05
GSMUA_Achr7P09440_001	Banana	mitochondrion	27.53	26.02
GSMUA_Achr4P11070_001	Banana	cytosol	17.41	24.88
GSMUA_Achr3P29830_001	Banana	cytosol	16.92	24.52
GSMUA_Achr7P26200_001	Banana	extracellular, golgi	16.42	23.91
GSMUA_Achr9P14560_001	Banana	cytosol	22.89	23.59
GSMUA_Achr1P22790_001	Banana	mitochondrion	17.25	22.96
GSMUA_Achr5P16030_001	Banana	cytosol	17.91	22.93
GSMUA_Achr3P06160_001	Banana	plastid	21.23	22.57

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
EnsemblPlantsGene:GSMUA_Achr3G00280_001	EnsemblPlants:GSMUA_Achr3P00280_001	EnsemblPlants:GSMUA_Achr3T00280_001	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	UniProt:M0SAJ6	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698
PANTHER:PTHR23315	PANTHER:PTHR23315:SF111	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI000296F39F	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

U-box domain-containing protein 12 [Source:GMGC_GENE;Acc:GSMUA_Achr3G00280_001]

Coordinates

chr3:+:253594..258827

Molecular Weight (calculated)

65432.8 Da

IEP (calculated)

5.386

GRAVY (calculated)

-0.173

Length

603 amino acids

Sequence
(BLAST)

001: MAPTAEEEEA AGIGCGRGAV AVEALLGLVA DVSALPDNRG PFRRMCCDLA RRVKLLAPLF DELGDDADSL GPAEIRGLET LCAALLEAKD VLRFVNEGSK
101: LYQVLRPQKF EQVFRKVTES IEKALGEICL DKLNVSVEVK EQIELVHSQL CRAKESTDSL DLQLNRDLNW AISENHCDPT ILKRILEKLQ LKNKNDIMRE
201: SVALHEMVIS GAEDPDVSVE EMSSLLKKLK DFVISENSTS ASIEKKTSFA KHRSPVIPDD FRCPISLELM KDPVIVSTGQ TYERSYIQKW LDSGHKTCPK
301: TQQTLSHATL TPNFVLKSLI AQWCDANGIE LPKKQGSCQE SKPGNSSDCN RAGINVLLQR LANGNQEEQR AAAGELRLLA KRNADNRICI AEAGAIPILV
401: QLLSSPDPRT QEHAVTALLN LSINEDNKGL IVKAKAIPKI VEALESESME ARENAAAALF SLSVVDQNKG NKVIAVKAGI VVYLIRMLVD PSGGMVDEAL
501: AILAILASSQ EGKTAITHSN PIPLMVKLMK TGSARVRENA AALLFSLCGG DEQQLRAAVE SGAEEALKDL METGTERAKR KASSLLGLIR QTADSSNGGC
601: AET

Best Arabidopsis Sequence Match ( AT3G54850.1 )
(BLAST)

001: MGLTNCCSHE ELMSRLVDSV KEISGFSSSR GFIGKIQGDL VRRITLLSPF FEELIDVNVE LKKDQITGFE AMRIALDSSL ELFRSVNGGS KLFQLFDRDS
101: LVEKFRDMTV EIEAALSQIP YEKIEVSEEV REQVQLLHFQ FKRAKERWEE SDLQLSHDLA MAENVMDPDP IILKRLSQEL QLTTIDELKK ESHAIHEYFL
201: SYDGDPDDCF ERMSSLLKNL VDFVTMESSD PDPSTGSRIV SRHRSPVIPE YFRCPISLEL MKDPVIVSTG QTYERSSIQK WLDAGHKTCP KSQETLLHAG
301: LTPNYVLKSL IALWCESNGI ELPQNQGSCR TTKIGGSSSS DCDRTFVLSL LEKLANGTTE QQRAAAGELR LLAKRNVDNR VCIAEAGAIP LLVELLSSPD
401: PRTQEHSVTA LLNLSINEGN KGAIVDAGAI TDIVEVLKNG SMEARENAAA TLFSLSVIDE NKVAIGAAGA IQALISLLEE GTRRGKKDAA TAIFNLCIYQ
501: GNKSRAVKGG IVDPLTRLLK DAGGGMVDEA LAILAILSTN QEGKTAIAEA ESIPVLVEII RTGSPRNREN AAAILWYLCI GNIERLNVAR EVGADVALKE
601: LTENGTDRAK RKAASLLELI QQTEGVAVTT VP

Arabidopsis Description

PUB14U-box domain-containing protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.