Factsheet for GSMUA_Achr9P01670_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P06560_001	Banana	cytosol	65.67	82.04
GSMUA_Achr10P...	Banana	cytosol	57.73	71.93
Os02t0488600-01	Rice	cytosol, nucleus	59.01	65.01
EES06804	Sorghum	cytosol	59.66	59.91
Zm00001d016501_P001	Maize	cytosol	59.66	59.78
VIT_04s0043g00840.t01	Wine grape	cytosol	55.15	56.48
TraesCS2D01G275400.1	Wheat	nucleus	54.29	55.0
VIT_00s0524g00030.t01	Wine grape	cytosol	52.79	54.79
TraesCS2B01G294100.1	Wheat	nucleus	54.08	54.78
TraesCS2A01G276400.1	Wheat	nucleus	54.08	54.78
KRH68828	Soybean	cytosol	50.43	54.65
Os04t0348400-01	Rice	cytosol	53.43	54.25
PGSC0003DMT400016998	Potato	cytosol	51.07	53.01
KRG97080	Soybean	cytosol, nucleus	50.0	52.95
HORVU2Hr1G067610.6	Barley	cytosol	53.22	52.32
Solyc09g056450.2.1	Tomato	cytosol	50.0	51.89
AT3G07360.1	Thale cress	cytosol	50.21	50.87
CDX74050	Canola	cytosol	49.57	50.66
Bra040374.1-P	Field mustard	cytosol	48.71	50.33
KRH46608	Soybean	cytosol	49.79	50.33
Bra001247.1-P	Field mustard	cytosol	49.14	50.22
CDY28059	Canola	cytosol	49.79	50.22
CDY71737	Canola	cytosol	49.57	50.0
KRG99581	Soybean	cytosol	49.36	49.89
CDY08002	Canola	cytosol	48.5	49.67
Bra029642.1-P	Field mustard	cytosol	49.14	49.57
KRG92593	Soybean	cytosol	45.92	48.31
PGSC0003DMT400011486	Potato	cytosol	33.91	44.26
Solyc04g050770.1.1	Tomato	cytosol	40.99	43.12
PGSC0003DMT400039084	Potato	cytosol	40.77	42.89
Solyc04g050780.1.1	Tomato	cytosol	39.27	42.46
AT5G18320.1	Thale cress	cytosol	36.27	36.9
CDY68352	Canola	cytosol	35.84	36.62
CDY38506	Canola	cytosol	35.19	35.96
GSMUA_Achr4P03430_001	Banana	cytosol	19.74	34.2
GSMUA_Achr9P12570_001	Banana	cytosol	21.24	33.0
AT5G18330.1	Thale cress	cytosol	30.9	32.36
AT5G18340.1	Thale cress	nucleus	31.55	32.24
CDX70810	Canola	cytosol	30.69	30.3
Bra006451.1-P	Field mustard	cytosol	29.18	29.12
GSMUA_Achr3P18890_001	Banana	cytosol	22.1	28.69
GSMUA_Achr8P25140_001	Banana	plastid	25.75	28.57
GSMUA_Achr6P07710_001	Banana	cytosol	21.89	28.57
GSMUA_Achr10P...	Banana	cytosol	22.32	27.96
GSMUA_Achr4P14130_001	Banana	cytosol	19.96	26.8
GSMUA_Achr4P06990_001	Banana	plastid	23.18	26.8
CDY51235	Canola	extracellular, golgi	29.18	26.2
GSMUA_Achr4P10960_001	Banana	endoplasmic reticulum	22.32	25.62
GSMUA_Achr6P36530_001	Banana	cytosol	35.84	25.3
GSMUA_Achr3P29830_001	Banana	cytosol	22.53	25.24
GSMUA_Achr4P01530_001	Banana	plasma membrane	32.19	24.55
GSMUA_Achr4P11070_001	Banana	cytosol	22.1	24.41
GSMUA_Achr3P00280_001	Banana	cytosol	31.55	24.38
GSMUA_Achr7P26200_001	Banana	extracellular, golgi	21.03	23.67
GSMUA_Achr1P24290_001	Banana	cytosol	30.9	23.57
GSMUA_Achr10P...	Banana	cytosol	31.12	23.16
GSMUA_Achr6P34170_001	Banana	cytosol	32.62	22.89
GSMUA_Achr5P28670_001	Banana	cytosol	27.9	22.81
GSMUA_Achr5P21360_001	Banana	cytosol	36.7	22.53
GSMUA_Achr1P22790_001	Banana	mitochondrion	21.46	22.08
GSMUA_Achr9P15600_001	Banana	cytosol	31.97	22.04
GSMUA_Achr5P16030_001	Banana	cytosol	21.67	21.44
GSMUA_Achr2P15530_001	Banana	mitochondrion	30.26	21.36
GSMUA_Achr4P04900_001	Banana	cytosol	23.61	20.83
GSMUA_Achr4P05030_001	Banana	cytosol	23.18	20.61
GSMUA_Achr5P07140_001	Banana	cytosol	27.25	20.22
GSMUA_Achr9P28820_001	Banana	mitochondrion	25.97	20.2
GSMUA_Achr7P22130_001	Banana	cytosol	26.61	19.59
GSMUA_Achr7P09440_001	Banana	mitochondrion	26.61	19.44
GSMUA_Achr4P00200_001	Banana	plastid	29.18	19.32
GSMUA_Achr9P14560_001	Banana	cytosol	22.32	17.78
GSMUA_Achr10P...	Banana	mitochondrion	16.31	16.81
GSMUA_Achr10P...	Banana	cytosol	30.9	16.67
GSMUA_Achr3P06160_001	Banana	plastid	19.74	16.23
Bra002153.1-P	Field mustard	cytosol	35.84	12.23
CDX70805	Canola	cytosol	30.26	9.15
CDY51234	Canola	cytosol	31.55	8.87
Bra006452.1-P	Field mustard	cytosol	31.55	8.85

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr9G01670_001	EnsemblPlants:GSMUA_Achr9P01670_001	EnsemblPlants:GSMUA_Achr9T01670_001	InterPro:IPR000225	InterPro:IPR003613
InterPro:IPR011989	InterPro:IPR013083	UniProt:M0TWM4	PFAM:PF00514	PFAM:PF04564	PFscan:PS51698
PANTHER:PTHR23315	PANTHER:PTHR23315:SF75	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI0002966564	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

U-box domain-containing protein 9 [Source:GMGC_GENE;Acc:GSMUA_Achr9G01670_001]

Coordinates

chr9:+:1306678..1309170

Molecular Weight (calculated)

50567.6 Da

IEP (calculated)

8.338

GRAVY (calculated)

-0.283

Length

466 amino acids

Sequence
(BLAST)

001: MAKSGPAESG LAAARVGELK KELRRLVRAI AEEDDSRIEK FEGAARALAA LKDLRFRGSG NSNGALASQR KAETEIEAVV VPEHFLCPIS AELMRDPVVV
101: ASGQTYDRAF IEEWLSSGNR TCPQTQRVLS DTTLTPNHLV RSMISQWCIE HGVTLPPLDQ GQEEGLITGK ERNALRRIFD KMSSSSSVPE QKQAVRELRL
201: LTKRNRSFRA LVGENPDTIP QLLSVLSAPG LRCDPEVQED TVTTILNLSI HDSNKKIVGD NPQAIPLLID ALQTGTMETR SNAAAALFSL SALDCNKLKI
301: GESGAMKPLV DLLEQGSPSA KKDAGSAIFN LCMVHENRAR AVRGGAVGVV LKAIGHHSLV DESLAILALL SSDQDAVEEI ARAGGVPRLL GIVRDSPCAR
401: NKENAAVVLF SICMHDRTKL REVGEEEEKH GSISRLAQNG TSRARRKAAG IIDKWKRASR STHYSC

Best Arabidopsis Sequence Match ( AT3G07360.1 )
(BLAST)

001: MAKTGVFDSD PTAIAKAKEL KREMKKLLIK IDDEDDLGVQ TIDQLQDALS ALREATMRKM AKSSSLEMLE TVSCPEEFRC PLSNELMRDP VVLASGQTYD
101: KLFIQKWLSS GNRTCPKTQQ VLPHTALTPN LLIREMISKW CKKNGLETKS QYHPNLVNED ETVTRSDREI FNSLLCKVSS SNLQDQKSAA KELRLLTRKG
201: TEFRALFGES PDEITRLVNP LLHGSNPDEK LQEDVVTTLL NISIHDDSNK KLVCENPNVI PLLIDALRRG TVATRSNAAA AIFTLSALDS NKVLIGKSGI
301: LKPLIDLLEE GNPLAIKDVA AAIFTLCIAH ENRSRAVRDG AVRVLGKKIS NGLYVDELLA ILAMLVTHWK AVEELGELGG VSWLLKITRE SECKRNKENA
401: IVILHTICFS DRTKWKEIKE EENAHGTITK LSREGTSRAQ RKANGILDRL RKAMNLTHTA

Arabidopsis Description

PUB9RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VJC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.