Factsheet for VIT_04s0043g00840.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0524g00030.t01	Wine grape	cytosol	68.79	69.71
KRH68828	Soybean	cytosol	62.2	65.81
KRG97080	Soybean	cytosol, nucleus	63.08	65.23
GSMUA_Achr6P06560_001	Banana	cytosol	48.13	58.71
AT3G07360.1	Thale cress	cytosol	58.46	57.83
CDX74050	Canola	cytosol	57.14	57.02
Bra040374.1-P	Field mustard	cytosol	56.48	56.98
Bra001247.1-P	Field mustard	cytosol	56.92	56.8
CDY08002	Canola	cytosol	56.48	56.48
KRG92593	Soybean	cytosol	54.73	56.21
CDY71737	Canola	cytosol	56.7	55.84
CDY28059	Canola	cytosol	56.48	55.63
Bra029642.1-P	Field mustard	cytosol	56.26	55.41
GSMUA_Achr10P...	Banana	cytosol	45.49	55.35
GSMUA_Achr9P01670_001	Banana	cytosol	56.48	55.15
PGSC0003DMT400011486	Potato	cytosol	41.76	53.22
PGSC0003DMT400039084	Potato	cytosol	50.99	52.37
Solyc04g050770.1.1	Tomato	cytosol	50.33	51.69
Os02t0488600-01	Rice	cytosol, nucleus	47.69	51.3
Solyc04g050780.1.1	Tomato	cytosol	48.57	51.28
EES06804	Sorghum	cytosol	49.67	48.71
Zm00001d016501_P001	Maize	cytosol	48.79	47.74
Os04t0348400-01	Rice	cytosol	44.4	44.01
TraesCS2B01G294100.1	Wheat	nucleus	44.4	43.91
TraesCS2A01G276400.1	Wheat	nucleus	44.4	43.91
TraesCS2D01G275400.1	Wheat	nucleus	44.18	43.7
HORVU2Hr1G067610.6	Barley	cytosol	44.62	42.83
CDY68352	Canola	cytosol	39.78	39.69
AT5G18320.1	Thale cress	cytosol	39.34	39.08
CDY38506	Canola	cytosol	38.68	38.6
AT5G18330.1	Thale cress	cytosol	34.07	34.83
AT5G18340.1	Thale cress	nucleus	33.41	33.33
CDX70810	Canola	cytosol	32.75	31.57
Bra006451.1-P	Field mustard	cytosol	32.09	31.26
VIT_13s0019g04710.t01	Wine grape	cytosol	40.44	29.3
CDY51235	Canola	extracellular, golgi	32.09	28.13
VIT_01s0011g04770.t01	Wine grape	cytosol	37.8	26.92
VIT_06s0004g04530.t01	Wine grape	cytosol	40.0	26.69
VIT_18s0001g09130.t01	Wine grape	cytosol	22.42	26.29
VIT_00s2269g00010.t01	Wine grape	plastid	24.18	24.34
VIT_03s0038g03660.t01	Wine grape	cytosol	33.41	23.71
VIT_13s0067g01460.t01	Wine grape	cytosol	33.63	22.24
VIT_18s0001g14180.t01	Wine grape	cytosol	32.75	21.78
VIT_10s0003g01730.t01	Wine grape	mitochondrion	32.53	20.39
VIT_08s0058g01100.t01	Wine grape	plastid	30.11	20.24
VIT_07s0005g03520.t01	Wine grape	cytosol	34.95	20.2
VIT_17s0000g08080.t01	Wine grape	cytosol, mitochondrion	28.35	19.0
VIT_07s0129g00590.t01	Wine grape	cytosol	34.51	18.51
VIT_01s0026g00190.t01	Wine grape	cytosol	27.03	18.01
Bra002153.1-P	Field mustard	cytosol	39.34	13.1
CDX70805	Canola	cytosol	32.75	9.67
CDY51234	Canola	cytosol	33.63	9.23
Bra006452.1-P	Field mustard	cytosol	33.63	9.21

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100267223	wikigene:100267223	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	ProteinID:CBI28670	ProteinID:CBI28670.3	ncoils:Coil	UniProt:D7TDU7
EMBL:FN595763	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	EntrezGene:LOC100267223	wikigene:LOC100267223
PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF75	SMART:SM00185	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI00015CA4D3	InterPro:Ubox_domain	ArrayExpress:VIT_04s0043g00840	EnsemblPlantsGene:VIT_04s0043g00840
EnsemblPlants:VIT_04s0043g00840.t01	unigene:Vvi.11598	RefSeq:XP_002270882	RefSeq:XP_002270882.1	RefSeq:XP_019074714.1	InterPro:Znf_RING/FYVE/PHD

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:D7TDU7]

Coordinates

chr4:+:15210714..15212714

Molecular Weight (calculated)

50484.2 Da

IEP (calculated)

5.708

GRAVY (calculated)

-0.180

Length

455 amino acids

Sequence
(BLAST)

001: MAKFGVLETD PSMAAKATEE LKKELQRLVS RIVDEDESCA DTTDKALKIL FALRDFKFKG SLDFGVETEN PALPQEFRCP ISKQLMRDPV VVATGQTYDR
101: PFIQKWLKDG HRTCPRTQQV LSHTILTPNN LVREMISEWC KEHGIELPKP VEDVDEEVIT DADRGHLNSL LERMSSSASD QKEAARELRL LTKRMPSFRA
201: LFGECTDAVP QLLSPLSPDA VDVDPELQED LITTVLNLSI HDNNKKLVAE DPMAIPVLIE SLKSGTIETR TNAAAALFTL SALDSNKLII GKSGALKPLL
301: DLLEEGHPLA MKDVASAIFN LCIVLENKGR AVHDGAVTVI LKKIMDGILV DELLAILAML SSHQRAVEEM GELGAVPCLL RIIRESKCER NKENCIAILH
401: TVCFNDRAKL RAIREEENDY GTISRLAQTG TSRAKRKANG ILERLNRVAL ITHTA

Best Arabidopsis Sequence Match ( AT3G07360.1 )
(BLAST)

001: MAKTGVFDSD PTAIAKAKEL KREMKKLLIK IDDEDDLGVQ TIDQLQDALS ALREATMRKM AKSSSLEMLE TVSCPEEFRC PLSNELMRDP VVLASGQTYD
101: KLFIQKWLSS GNRTCPKTQQ VLPHTALTPN LLIREMISKW CKKNGLETKS QYHPNLVNED ETVTRSDREI FNSLLCKVSS SNLQDQKSAA KELRLLTRKG
201: TEFRALFGES PDEITRLVNP LLHGSNPDEK LQEDVVTTLL NISIHDDSNK KLVCENPNVI PLLIDALRRG TVATRSNAAA AIFTLSALDS NKVLIGKSGI
301: LKPLIDLLEE GNPLAIKDVA AAIFTLCIAH ENRSRAVRDG AVRVLGKKIS NGLYVDELLA ILAMLVTHWK AVEELGELGG VSWLLKITRE SECKRNKENA
401: IVILHTICFS DRTKWKEIKE EENAHGTITK LSREGTSRAQ RKANGILDRL RKAMNLTHTA

Arabidopsis Description

PUB9RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VJC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.