Factsheet for VIT_07s0005g03520.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g025270.2.1	Tomato	cytosol	58.58	61.55
GSMUA_Achr6P36530_001	Banana	cytosol	51.33	61.21
PGSC0003DMT400026700	Potato	cytosol	60.36	61.05
KRG95672	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	62.01	59.95
CDX78262	Canola	cytosol	51.72	57.98
Bra007097.1-P	Field mustard	cytosol	51.46	57.69
CDX73449	Canola	cytosol	51.46	57.53
Bra014787.1-P	Field mustard	cytosol	53.11	56.64
CDY02891	Canola	cytosol	52.99	56.58
GSMUA_Achr5P21360_001	Banana	cytosol	54.51	56.52
CDY64696	Canola	cytosol, extracellular, mitochondrion, plastid	52.99	56.5
AT3G54790.1	Thale cress	cytosol	54.26	56.18
KRH67390	Soybean	cytosol, plastid	59.97	55.14
KRH32190	Soybean	cytosol	46.38	55.05
VIT_07s0129g00590.t01	Wine grape	cytosol	47.14	43.75
VIT_18s0001g09130.t01	Wine grape	cytosol	20.2	40.98
VIT_00s0524g00030.t01	Wine grape	cytosol	21.35	37.42
VIT_13s0019g04710.t01	Wine grape	cytosol	29.48	36.94
VIT_00s2269g00010.t01	Wine grape	plastid	20.2	35.18
VIT_04s0043g00840.t01	Wine grape	cytosol	20.2	34.95
VIT_06s0004g04530.t01	Wine grape	cytosol	30.24	34.9
VIT_03s0038g03660.t01	Wine grape	cytosol	27.19	33.39
VIT_01s0011g04770.t01	Wine grape	cytosol	27.06	33.33
VIT_18s0001g14180.t01	Wine grape	cytosol	27.32	31.43
VIT_13s0067g01460.t01	Wine grape	cytosol	26.68	30.52
VIT_10s0003g01730.t01	Wine grape	mitochondrion	24.14	26.17
VIT_17s0000g08080.t01	Wine grape	cytosol, mitochondrion	22.11	25.63
VIT_08s0058g01100.t01	Wine grape	plastid	21.47	24.96
VIT_01s0026g00190.t01	Wine grape	cytosol	20.58	23.72

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100266964	wikigene:100266964	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	ProteinID:CCB60125	ProteinID:CCB60125.1	ncoils:Coil	UniProt:F6HZL0
EMBL:FN596502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	EntrezGene:LOC100266964	wikigene:LOC100266964
PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF119
SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	TIGR:TC57744	UniParc:UPI000210A557
InterPro:Ubox_domain	ArrayExpress:VIT_07s0005g03520	EnsemblPlantsGene:VIT_07s0005g03520	EnsemblPlants:VIT_07s0005g03520.t01	RefSeq:XP_002277883	RefSeq:XP_002277883.1
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F6HZL0]

Coordinates

chr7:+:6412350..6416250

Molecular Weight (calculated)

86545.5 Da

IEP (calculated)

7.074

GRAVY (calculated)

-0.150

Length

787 amino acids

Sequence
(BLAST)

001: MDTKSVRCLI NSISRFIHLV SCQTLKPMPI QKDCRNMVGL LKLLKPVLDD VVNCKIPSDE ILFKECEELD MAVNEAREFV ENWCPKMSKI FSVLQSEQLV
101: MKIQSSSLEI CFILCRLLHS SPSVSNLTSI QHCMQKLQHL EQKRISEYIE QALRSQRDEI IPHTQQLAKI IESLSLTSKQ ELLKESVAVE RERMNAQVNK
201: TAYELDQINQ IVELVSHIRD CMVRLGGFEA INGVRIPSYF RCPLSLELMM DPVIVASGQT YERSSIQKWL DQGLMICPKT RQTLAHANLI PNYTVKALIE
301: NWCEENNITL SGTSEHTNIT PVPSPLDHVS AQDVIGMDSF RCSIHSSNCT SRSSLEVGNG IEKLKVDVST RFGGEESNVC KSREPEKLER QSPEQSYIHS
401: RTESTSSAVS SIDSLPTAST ELSRISNKQE NGTGLSGEIT SECHASPSNR DLEFSPWFSG KQFHSSKTKV EMVSNGKCGP PRILSLPFSD PKFDDLTTSS
501: HVEKLVEDLK SQSNELQTVA ASELRLLAKH NMENRIIIGR CGAIAPLVLL LYSEVKQTQE NAVTALLNLS INDANKVIIA EAGAIESLIH VLKSGNAGAK
601: ENSAATLFSL SVLEEYKAKI GCSGAVKALV DLLGSGTLRG KKDAATALFN LSICHENKPR IIQAGAVKYL VQLMEPATGM VDKAVALLAN LSIISEGRFA
701: IVREGGIPLL VELVETGSVR GKENAASILL QLCINSPKFC TLVLQEGAIP PLVALSQSGT PRAKEKAQQL LSHFRNQREG AAAKGKS

Best Arabidopsis Sequence Match ( AT3G54790.3 )
(BLAST)

001: MDPVPVRCLL NSISRYLHLV ACQTIRFNPI QTCIGNMVLL LKLLKPLLDE VVDCKIPSDD CLYKGCEDLD SVVNQAREFL EDWSPKLSKL FGVFQCEVLL
101: GKVQTCSLEI SRILLQLSQS SPVTSSVQSV ERCVQETESF KQEGTLMELM ENALRNQKDD ITSLDNNHLE SIIQMLGLIS NQDLLKESIT VEKERIRSQA
201: SKSEEDMEQT EQLIELVLCI REHMLKTEFL EVAKGISIPP YFRCPLSTEL MLDPVIVASG QTFDRTSIKK WLDNGLAVCP RTRQVLTHQE LIPNYTVKAM
301: IASWLEANRI NLATNSCHQY DGGDASSMAN NMGSQDFNRT ESFRFSLRSS SLTSRSSLET GNGFEKLKIN VSASLCGESQ SKDLEIFELL SPGQSYTHSR
401: SESVCSVVSS VDYVPSVTHE TESILGNHQS SSEMSPKKNL ESSNNVNHEH SAAKTYECSV HDLDDSGTMT TSHTIKLVED LKSGSNKVKT AAAAEIRHLT
501: INSIENRVHI GRCGAITPLL SLLYSEEKLT QEHAVTALLN LSISELNKAM IVEVGAIEPL VHVLNTGNDR AKENSAASLF SLSVLQVNRE RIGQSNAAIQ
601: ALVNLLGKGT FRGKKDAASA LFNLSITHDN KARIVQAKAV KYLVELLDPD LEMVDKAVAL LANLSAVGEG RQAIVREGGI PLLVETVDLG SQRGKENAAS
701: VLLQLCLNSP KFCTLVLQEG AIPPLVALSQ SGTQRAKEKA QQLLSHFRNQ RDARMKKGRS

Arabidopsis Description

PUB3U-box domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWV5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.