Factsheet for VIT_03s0038g03660.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P05030_001	Banana	cytosol	50.23	61.45
VIT_18s0001g14180.t01	Wine grape	cytosol	63.96	59.94
GSMUA_Achr4P04900_001	Banana	cytosol	48.83	59.28
HORVU7Hr1G061800.2	Barley	cytosol	57.41	57.14
TraesCS7B01G186600.1	Wheat	cytosol	57.25	56.99
TraesCS7D01G289800.1	Wheat	cytosol	57.1	56.83
TraesCS7A01G293900.1	Wheat	cytosol	56.94	56.68
Os08t0481200-01	Rice	cytosol	56.32	56.23
EES15482	Sorghum	cytosol	55.54	55.37
Zm00001d014845_P001	Maize	cytosol	55.23	55.23
KXG20946	Sorghum	cytosol	55.23	55.05
HORVU7Hr1G121810.1	Barley	cytosol	54.91	54.91
Zm00001d031263_P001	Maize	cytosol	54.76	54.42
TraesCS7A01G549700.1	Wheat	cytosol	54.76	54.33
TraesCS7D01G536300.1	Wheat	cytosol	54.6	54.26
TraesCS7B01G473200.1	Wheat	cytosol	55.23	52.52
Os06t0726900-00	Rice	cytosol	28.86	48.68
VIT_13s0019g04710.t01	Wine grape	cytosol	41.97	42.83
VIT_06s0004g04530.t01	Wine grape	cytosol	44.46	41.79
VIT_01s0011g04770.t01	Wine grape	cytosol	39.94	40.06
VIT_04s0043g00840.t01	Wine grape	cytosol	23.71	33.41
VIT_13s0067g01460.t01	Wine grape	cytosol	34.32	31.98
VIT_00s0524g00030.t01	Wine grape	cytosol	22.31	31.85
VIT_18s0001g09130.t01	Wine grape	cytosol	19.19	31.7
VIT_10s0003g01730.t01	Wine grape	mitochondrion	32.14	28.37
VIT_07s0005g03520.t01	Wine grape	cytosol	33.39	27.19
VIT_00s2269g00010.t01	Wine grape	plastid	19.03	26.99
VIT_17s0000g08080.t01	Wine grape	cytosol, mitochondrion	27.77	26.21
VIT_07s0129g00590.t01	Wine grape	cytosol	34.32	25.94
VIT_08s0058g01100.t01	Wine grape	plastid	26.99	25.55
VIT_01s0026g00190.t01	Wine grape	cytosol	25.12	23.57

Protein Annotations

Gene3D:1.20.930.20	Gene3D:1.25.10.10	EntrezGene:100250244	wikigene:100250244	Gene3D:3.30.40.10	MapMan:35.1
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Adaptor_Cbl_N_dom_sf	InterPro:Armadillo	ProteinID:CCB60547	ProteinID:CCB60547.1
ncoils:Coil	UniProt:F6I0T1	EMBL:FN596508	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0004871	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0007166
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
InterPro:IPR036537	EntrezGene:LOC100250244	wikigene:LOC100250244	PFAM:PF04564	PFAM:PF05804	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF114	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniParc:UPI00015C8AC4	InterPro:Ubox_domain	ArrayExpress:VIT_03s0038g03660	EnsemblPlantsGene:VIT_03s0038g03660	EnsemblPlants:VIT_03s0038g03660.t01
unigene:Vvi.15461	RefSeq:XP_002279546	RefSeq:XP_002279546.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F6I0T1]

Coordinates

chr3:-:2620446..2623070

Molecular Weight (calculated)

70862.4 Da

IEP (calculated)

7.862

GRAVY (calculated)

-0.149

Length

641 amino acids

Sequence
(BLAST)

001: MEGETGEKGS VCGSSEGDVI GEMMEVIENV GSYVGFRRTQ RKESLNLVRR LKLLVPLLEE LRELGTAAVS GEALGCLARL KKALVSAKKL LKNCNYGSKI
101: YLAHESEAVA VRFHAVYDKL NQALDDLPYN DLGISDEVKE QVELMRMQLK RAKRRTETQD IELAMDLMVV FSKTDDRNAD TAILERLASK LELRTVADLK
201: VETVAVRKLV KERAGLSAEA SQQIVELLGK FKKLAGMEES SVLDGPVLSR NLQKCPSLVI PHEFLCPISL EIMTDPVIVA TGQTYERESI QKWLDSDHHT
301: CPKTGQTLVH LSLAPNYALR NLILQWCEKN QFELPRKDIK AGSNGSSIQV KQKISSLVQN LSSSQPDVQR KAIMKIRMLA KENPDNRIRI ANRGGIPPLV
401: QLLSYPDSKL QEHTVTALLN LSIDEANKRL IAREGAIPAI IEILQNGTDE ARENSAAALF SLSMLDENKV MIGSLNGIPP LVNLLQNGTT RGKKDAATAL
501: FNLSLNQSNK SRAIKAGIIP ALLHLLEDKN LGMIDEALSI LLLLVSHPEG QTEIGRLSFI VTLVEIMKDG TPKNKECATS VLLELGLNNS SFILAALQYG
601: VYDHLVEIMR CGTNRAQRKA NCLLQHMCKC EHIPWNFNVG A

Best Arabidopsis Sequence Match ( AT5G42340.1 )
(BLAST)

001: MVDVMDTDEE ATGDAENRDE EVTAEEPIHD EVVDAVEIHE EEVKEDDDDC EGLVSDIVSI VEFLDQINGY RRTQQKECFN LVRRLKILIP FLDEIRGFES
101: PSCKHFLNRL RKVFLAAKKL LETCSNGSKI YMALDGETMM TRFHSIYEKL NRVLVKAPFD ELMISGDAKD EIDSLCKQLK KAKRRTDTQD IELAVDMMVV
201: FSKTDPRNAD SAIIERLAKK LELQTIDDLK TETIAIQSLI QDKGGLNIET KQHIIELLNK FKKLQGLEAT DILYQPVINK AITKSTSLIL PHEFLCPITL
301: EIMLDPVIIA TGQTYEKESI QKWFDAGHKT CPKTRQELDH LSLAPNFALK NLIMQWCEKN NFKIPEKEVS PDSQNEQKDE VSLLVEALSS SQLEEQRRSV
401: KQMRLLAREN PENRVLIANA GAIPLLVQLL SYPDSGIQEN AVTTLLNLSI DEVNKKLISN EGAIPNIIEI LENGNREARE NSAAALFSLS MLDENKVTIG
501: LSNGIPPLVD LLQHGTLRGK KDALTALFNL SLNSANKGRA IDAGIVQPLL NLLKDKNLGM IDEALSILLL LASHPEGRQA IGQLSFIETL VEFIRQGTPK
601: NKECATSVLL ELGSNNSSFI LAALQFGVYE YLVEITTSGT NRAQRKANAL IQLISKSEQI

Arabidopsis Description

PUB15U-box domain-containing protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q681N2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.