Factsheet for VIT_18s0001g09130.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g088360.1.1	Tomato	cytosol	56.19	79.27
KRH15451	Soybean	cytosol	54.9	78.6
Bra040513.1-P	Field mustard	cytosol	53.09	78.33
CDY28679	Canola	cytosol	52.84	77.95
Solyc04g077850.2.1	Tomato	cytosol	71.39	77.81
PGSC0003DMT400027542	Potato	cytosol	70.88	77.25
PGSC0003DMT400030161	Potato	cytosol	70.62	76.54
KRH05594	Soybean	cytosol	69.33	76.42
AT3G01400.1	Thale cress	cytosol	68.3	74.65
CDX74298	Canola	plastid	67.01	73.45
Bra001006.1-P	Field mustard	plastid	66.75	73.16
CDX91947	Canola	plastid	66.49	73.09
CDY02828	Canola	cytosol	63.66	69.77
CDY32692	Canola	peroxisome	63.14	69.41
Bra020360.1-P	Field mustard	cytosol	62.89	69.12
KRH52088	Soybean	cytosol	58.25	69.11
AT5G58680.1	Thale cress	cytosol	61.6	66.95
GSMUA_Achr4P03430_001	Banana	cytosol	42.01	60.59
GSMUA_Achr6P07710_001	Banana	cytosol	53.35	57.98
GSMUA_Achr3P18890_001	Banana	cytosol	51.55	55.71
Os07t0587500-01	Rice	cytosol	51.55	55.25
GSMUA_Achr10P...	Banana	cytosol	52.06	54.3
Zm00001d021978_P001	Maize	cytosol	50.52	54.14
EER97464	Sorghum	cytosol	50.52	54.14
TraesCS2B01G213900.1	Wheat	cytosol	50.0	53.74
TraesCS2A01G193000.1	Wheat	cytosol	49.74	53.46
Zm00001d006726_P001	Maize	cytosol	49.48	53.33
TraesCS2D01G194400.1	Wheat	cytosol	49.48	53.19
GSMUA_Achr4P14130_001	Banana	cytosol	43.3	48.41
GSMUA_Achr4P10960_001	Banana	endoplasmic reticulum	50.52	48.28
GSMUA_Achr7P26200_001	Banana	extracellular, golgi	48.71	45.65
GSMUA_Achr5P16030_001	Banana	cytosol	52.58	43.31
VIT_00s2269g00010.t01	Wine grape	plastid	45.62	39.16
Os03t0435300-00	Rice	cytosol	36.6	35.5
Zm00001d003967_P001	Maize	plastid	39.95	34.44
VIT_04s0043g00840.t01	Wine grape	cytosol	26.29	22.42
VIT_00s0524g00030.t01	Wine grape	cytosol	25.26	21.83
VIT_01s0011g04770.t01	Wine grape	cytosol	34.79	21.13
VIT_13s0019g04710.t01	Wine grape	cytosol	33.25	20.54
VIT_07s0005g03520.t01	Wine grape	cytosol	40.98	20.2
VIT_07s0129g00590.t01	Wine grape	cytosol	42.78	19.58
VIT_06s0004g04530.t01	Wine grape	cytosol	33.76	19.21
VIT_03s0038g03660.t01	Wine grape	cytosol	31.7	19.19
VIT_13s0067g01460.t01	Wine grape	cytosol	32.22	18.17
VIT_18s0001g14180.t01	Wine grape	cytosol	29.64	16.81
VIT_10s0003g01730.t01	Wine grape	mitochondrion	27.84	14.88
VIT_01s0026g00190.t01	Wine grape	cytosol	23.45	13.32
VIT_17s0000g08080.t01	Wine grape	cytosol, mitochondrion	23.2	13.25
VIT_08s0058g01100.t01	Wine grape	plastid	22.68	13.0

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100252212	wikigene:100252212	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	ProteinID:CBI19404	ProteinID:CBI19404.3	UniProt:E0CP26	EMBL:FN595227	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	InterPro:IPR000225	InterPro:IPR011989	EntrezGene:LOC100252212	wikigene:LOC100252212	PFAM:PF00514
PFscan:PS50176	PANTHER:PTHR23315	PANTHER:PTHR23315:SF64	SMART:SM00185	SUPFAM:SSF48371	UniParc:UPI0001BE122B
ArrayExpress:VIT_18s0001g09130	EnsemblPlantsGene:VIT_18s0001g09130	EnsemblPlants:VIT_18s0001g09130.t01	unigene:Vvi.16684	RefSeq:XP_002285318	RefSeq:XP_002285318.1

Description

No Description!

Coordinates

chr18:+:7595872..7598115

Molecular Weight (calculated)

41867.3 Da

IEP (calculated)

7.538

GRAVY (calculated)

-0.153

Length

388 amino acids

Sequence
(BLAST)

001: MSNKRTKDKK VVLGSGRIGT CDDVELWNAK RWCRRISSTE TEIPANYIYM GQSSGDHNDY SSTFSDCNSD RSGEFPTTSS QGRRLLLACA ADNCDDLIRQ
101: LVSDLNSCSI DEQKQAAMEI RLLAKNKPEN RLKIAGAGAI KPLISLISSS DAQLQENGVT AILNLSLCDE NKELIASSGA IKPLVRALKT GTSTAKENAA
201: CALLRLSQIE ENKIVIGMAG AIPLLVNLLG YGSFRGKKDA STTLYSLCSV KENKIRAIQA GIMKPLVELM ADFGSNMVDK AAYVLSQLVS LPEGKTSLVE
301: EDGIPVLVEI LEDGSQRQKE IAVAILLQIC EDSLAYRNMV AREGAIPPLV ALSQSSANRS KQKAEALIDL LRQPRSGNVA ARTSDVSV

Best Arabidopsis Sequence Match ( AT3G01400.1 )
(BLAST)

001: MEMENHRPGS FTYMGRKFSD LSLNDDSSAF SDCNSDRSGE FPTASSESRR LLLSCASENS DDLINHLVSH LDSSYSIDEQ KQAAMEIRLL SKNKPENRIK
101: IAKAGAIKPL ISLISSSDLQ LQEYGVTAIL NLSLCDENKE SIASSGAIKP LVRALKMGTP TAKENAACAL LRLSQIEENK VAIGRSGAIP LLVNLLETGG
201: FRAKKDASTA LYSLCSAKEN KIRAVQSGIM KPLVELMADF GSNMVDKSAF VMSLLMSVPE SKPAIVEEGG VPVLVEIVEV GTQRQKEMAV SILLQLCEES
301: VVYRTMVARE GAIPPLVALS QAGTSRAKQK AEALIELLRQ PRSISNGGAR SSSQL

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SGH8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.