Factsheet for PGSC0003DMT400027542

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g077850.2.1	Tomato	cytosol	98.6	98.6
PGSC0003DMT400030161	Potato	cytosol	86.24	85.75
KRH15451	Soybean	cytosol	63.2	83.03
Bra040513.1-P	Field mustard	cytosol	59.83	80.99
CDY28679	Canola	cytosol	59.83	80.99
KRH05594	Soybean	cytosol	78.93	79.83
CDX74298	Canola	plastid	78.09	78.53
AT3G01400.1	Thale cress	cytosol	78.09	78.31
Bra001006.1-P	Field mustard	plastid	77.81	78.25
CDX91947	Canola	plastid	76.12	76.77
CDY02828	Canola	cytosol	73.03	73.45
Bra020360.1-P	Field mustard	cytosol	72.19	72.8
CDY32692	Canola	peroxisome	71.91	72.52
KRH52088	Soybean	cytosol	65.45	71.25
VIT_18s0001g09130.t01	Wine grape	cytosol	77.25	70.88
AT5G58680.1	Thale cress	cytosol	70.22	70.03
GSMUA_Achr4P03430_001	Banana	cytosol	48.03	63.57
GSMUA_Achr6P07710_001	Banana	cytosol	58.99	58.82
Os07t0587500-01	Rice	cytosol	57.87	56.91
GSMUA_Achr3P18890_001	Banana	cytosol	57.3	56.82
GSMUA_Achr10P...	Banana	cytosol	58.99	56.45
EER97464	Sorghum	cytosol	56.74	55.8
TraesCS2B01G213900.1	Wheat	cytosol	56.46	55.68
Zm00001d006726_P001	Maize	cytosol	56.18	55.56
Zm00001d021978_P001	Maize	cytosol	56.46	55.52
TraesCS2A01G193000.1	Wheat	cytosol	56.18	55.4
TraesCS2D01G194400.1	Wheat	cytosol	55.9	55.12
GSMUA_Achr4P14130_001	Banana	cytosol	49.16	50.43
GSMUA_Achr4P10960_001	Banana	endoplasmic reticulum	55.9	49.01
GSMUA_Achr7P26200_001	Banana	extracellular, golgi	55.34	47.58
GSMUA_Achr5P16030_001	Banana	cytosol	58.71	44.37
Os03t0435300-00	Rice	cytosol	41.85	37.25
PGSC0003DMT400034564	Potato	nucleus, plastid	46.91	36.46
Zm00001d003967_P001	Maize	plastid	44.38	35.11
PGSC0003DMT400060674	Potato	plastid	44.38	35.03
PGSC0003DMT400082693	Potato	cytosol	17.98	26.23
PGSC0003DMT400027406	Potato	cytosol	19.66	26.22
PGSC0003DMT400016998	Potato	cytosol	30.34	24.05
PGSC0003DMT400039084	Potato	cytosol	26.69	21.44
PGSC0003DMT400015349	Potato	cytosol	37.92	20.87
PGSC0003DMT400011486	Potato	cytosol	20.79	20.73
PGSC0003DMT400019235	Potato	cytosol	35.96	20.51
PGSC0003DMT400026700	Potato	cytosol	44.38	20.31
PGSC0003DMT400078473	Potato	cytosol	36.8	20.15
PGSC0003DMT400046295	Potato	cytosol	46.07	19.98
PGSC0003DMT400001049	Potato	cytosol	36.52	19.58
PGSC0003DMT400078166	Potato	cytosol	36.24	19.52
PGSC0003DMT400090858	Potato	cytosol, mitochondrion	22.75	17.8
PGSC0003DMT400077205	Potato	cytosol	32.3	16.94
PGSC0003DMT400025648	Potato	cytosol	30.34	16.64
PGSC0003DMT400075612	Potato	cytosol	29.78	16.43
PGSC0003DMT400095861	Potato	cytosol, plasma membrane	25.84	16.43
PGSC0003DMT400073254	Potato	cytosol	29.78	14.64
PGSC0003DMT400062931	Potato	cytosol	25.28	13.2
PGSC0003DMT400071349	Potato	plastid	23.03	11.85

Protein Annotations

EnsemblPlants:PGSC0003DMT400027542	EnsemblPlantsGene:PGSC0003DMG400010616	EntrezGene:102590450	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	InterPro:IPR000225	InterPro:IPR011989
PANTHER:PTHR23315	PANTHER:PTHR23315:SF64	PFAM:PF00514	PFscan:PS50176	PGSC:PGSC0003DMG400010616	RefSeq:XP_006356861.1
SMART:SM00185	SUPFAM:SSF48371	UniParc:UPI00029675B4	UniProt:M1APT2	MapMan:35.1	:

Description

E3 ubiquitin ligase PUB14 [Source:PGSC_GENE;Acc:PGSC0003DMG400010616]

Coordinates

chr4:+:66972533..66975175

Molecular Weight (calculated)

37958.7 Da

IEP (calculated)

5.647

GRAVY (calculated)

0.000

Length

356 amino acids

Sequence
(BLAST)

001: METEVQSNFT YMGRTFTNLS INGSSSAFSD CNSDISGEFP TASSQSRRLF LACASENSDE LIEQLVSDLE SSSIDEQKQA VIEIRLLAKN KPENRIKIAR
101: AGAIKPLISL ISSTDPQLQE NGVTAILNLS LCDENKELIA ASGAIKPLVR ALKVGTSTAR ENAACALLRL SQVEENKIAI GRSGAIPPLV NLLETGNFRG
201: KKDASTALYS LCSVKENKVR AVQAGVMKPL VELMADFSSN MVDKSAFVVS ELISVAEARP ALVDEGGIPV LVEIVEVGSQ RQKEIAVAIL LQICEDSVAY
301: RTMVAREGAI PPLVALSQSG TSRAKRKAEK LIDLLRQPRS GNGAATAVAR TSGVPV

Best Arabidopsis Sequence Match ( AT3G01400.1 )
(BLAST)

001: MEMENHRPGS FTYMGRKFSD LSLNDDSSAF SDCNSDRSGE FPTASSESRR LLLSCASENS DDLINHLVSH LDSSYSIDEQ KQAAMEIRLL SKNKPENRIK
101: IAKAGAIKPL ISLISSSDLQ LQEYGVTAIL NLSLCDENKE SIASSGAIKP LVRALKMGTP TAKENAACAL LRLSQIEENK VAIGRSGAIP LLVNLLETGG
201: FRAKKDASTA LYSLCSAKEN KIRAVQSGIM KPLVELMADF GSNMVDKSAF VMSLLMSVPE SKPAIVEEGG VPVLVEIVEV GTQRQKEMAV SILLQLCEES
301: VVYRTMVARE GAIPPLVALS QAGTSRAKQK AEALIELLRQ PRSISNGGAR SSSQL

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SGH8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.