Factsheet for PGSC0003DMT400095861

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400082693	Potato	cytosol	43.57	100.0
Solyc05g005670.1.1	Tomato	cytosol, mitochondrion	95.36	77.96
PGSC0003DMT400090858	Potato	cytosol, mitochondrion	58.21	71.65
VIT_01s0026g00190.t01	Wine grape	cytosol	61.07	50.07
KRH69547	Soybean	cytosol, plastid	52.68	41.37
PGSC0003DMT400062931	Potato	cytosol	48.39	39.74
CDX93411	Canola	mitochondrion	43.04	34.53
Bra019924.1-P	Field mustard	mitochondrion	42.68	34.39
CDY55050	Canola	cytosol	42.68	34.34
AT1G10560.1	Thale cress	cytosol	42.32	34.0
AT1G60190.1	Thale cress	cytosol, plastid	41.61	33.97
CDY24520	Canola	cytosol	40.54	33.68
Bra031521.1-P	Field mustard	cytosol	40.36	33.38
CDY54132	Canola	cytosol	40.18	33.09
GSMUA_Achr9P14560_001	Banana	cytosol	33.57	32.14
GSMUA_Achr3P06160_001	Banana	plastid	31.25	30.86
TraesCS2A01G475600.1	Wheat	cytosol, plasma membrane	37.68	30.54
TraesCS2D01G475600.1	Wheat	cytosol, plasma membrane	37.5	30.48
TraesCS2B01G499300.1	Wheat	plasma membrane	37.32	30.33
Zm00001d050308_P001	Maize	mitochondrion, plasma membrane	37.14	29.97
Os09t0378700-00	Rice	plasma membrane, plastid	38.04	29.92
TraesCS5A01G198800.1	Wheat	cytosol, plasma membrane	36.96	29.53
HORVU5Hr1G059280.1	Barley	cytosol, plasma membrane	36.79	29.39
TraesCS5B01G197400.1	Wheat	cytosol, plasma membrane, plastid	36.79	29.39
TraesCS5D01G204700.1	Wheat	cytosol, plasma membrane	36.43	29.1
OQU80426	Sorghum	endoplasmic reticulum, plasma membrane	36.79	28.85
Zm00001d020332_P001	Maize	cytosol	35.18	28.22
KXG35540	Sorghum	plasma membrane	35.89	28.07
Os08t0415600-00	Rice	cytosol	34.46	26.92
PGSC0003DMT400019235	Potato	cytosol	29.46	26.44
PGSC0003DMT400027542	Potato	cytosol	16.43	25.84
PGSC0003DMT400001049	Potato	cytosol	30.54	25.75
PGSC0003DMT400030161	Potato	cytosol	16.25	25.42
PGSC0003DMT400078166	Potato	cytosol	29.64	25.11
PGSC0003DMT400016998	Potato	cytosol	20.0	24.94
PGSC0003DMT400077205	Potato	cytosol	30.0	24.74
PGSC0003DMT400073254	Potato	cytosol	31.43	24.31
CDY04344	Canola	cytosol	13.39	23.51
PGSC0003DMT400011486	Potato	cytosol	14.64	22.97
PGSC0003DMT400015349	Potato	cytosol	26.25	22.72
PGSC0003DMT400034564	Potato	nucleus, plastid	18.57	22.71
PGSC0003DMT400039084	Potato	cytosol	17.86	22.57
PGSC0003DMT400060674	Potato	plastid	17.86	22.17
CDY04342	Canola	cytosol	13.04	21.92
PGSC0003DMT400075612	Potato	cytosol	25.0	21.71
PGSC0003DMT400078473	Potato	cytosol	25.18	21.69
PGSC0003DMT400071349	Potato	plastid	26.43	21.39
PGSC0003DMT400025648	Potato	cytosol	23.57	20.34
PGSC0003DMT400027406	Potato	cytosol	9.29	19.48
PGSC0003DMT400026700	Potato	cytosol	25.18	18.12
PGSC0003DMT400046295	Potato	cytosol	24.46	16.69

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:107062219	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:M1DX72
PFAM:PF00514	PFAM:PF04564	EnsemblPlantsGene:PGSC0003DMG400045432	PGSC:PGSC0003DMG400045432	EnsemblPlants:PGSC0003DMT400095861	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF116	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniParc:UPI000296A5E3	InterPro:Ubox_domain	RefSeq:XP_015168085.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

Spotted leaf protein [Source:PGSC_GENE;Acc:PGSC0003DMG400045432]

Coordinates

chr5:+:7845565..7847247

Molecular Weight (calculated)

61646.3 Da

IEP (calculated)

6.873

GRAVY (calculated)

0.079

Length

560 amino acids

Sequence
(BLAST)

001: MLARAVAVAL DVLPLKEMDV SVEGQEVVEF VRNQAVKLKF EVEMDDGRMQ VNVLKILDQL ENEVIPETRD LKRVLDSLGI TRWSACNREV KFLDNEMLLE
101: GNTEEKRDMG ILSSLMGFMI YCRGTLFEVL DNGAGRQING GSTNADQVIR FLNLDDFRCP ITLEIMSEPV TIASGHTYDR ASILKWFRAG NSTCPKTGER
201: LTSIDLVPNF ALKVLIKQYC SANGIPFVET GRRNRDAGRF VGSSSVANEQ AMKLLASFLV GRLVGGTMEQ QNKAAFEIRL LTKTSIFNRS CLVEAGVIPP
301: LLNLVTSRDS SCQENSMATL LNLSKNSKCK STIVGNGGLF LILDVLKGGL KMEARQHAAG TLFYLTSVEE YRKMMGENPE FIPSLLELLR NGTDRGKKNA
401: LVTIFGLLMR PENHWRVIAA GLVPLVVNLL KSFEREDLIT DSLAVLTTLS ERLDGAMAVL YAGALPIIVN VLSSCNSRAS KEYCVSLLLA LCINGGADAV
501: PVLVKNSSLM GPLYSLLAEG NSKASKKAST LIRILHEYNE KTSSGLITPV FIEDQFINVW

Best Arabidopsis Sequence Match ( AT1G10560.1 )
(BLAST)

001: MIHTKTGSGR RILTFPTVEP SESISIVTLL DSLIQLAGDI LTFKSKHFST NKQSFRETLR RIQNLLVVFE EIRIRIRNSR RYFHDSAAAS SLKEIHVGFQ
101: KLKFLLEDCT RDGARLCMMM NSDQVSDHLR VLTRSISTSL SAFPVASVDL TTEVNELIDL VVRQARKYGV QPETNDKRAV SSINRILALF VNRVVPDPDE
201: INRILDHVGI RKWGDCVKEI NFLGEEIDAE RLDEKKKKSS DQVELLSSLM GFICYCRCII LGRIERDDHH NHHEDGIKKD HDLIRGLKVE DLLCPISLEI
301: MTDPVVIETG HTYDRSSITK WFGSGNITCP ITGKILTSTE LVDNVSVRQV IRKHCKTNGI VLAGISRRRK SHDDVVPESL AAKGAGKLIA KFLTSELING
401: GEEMIYRAVR EIRVQTKTSS FNRSCLVKAG AVTPLLKLLS SVDIRIQENA MAGILNLSKH VTGKSKIAGE GLKILVEILN EGAKTETRLY SASALFYLSS
501: VEDYSRLIGE NPDAIPGLMN IVKGDDYGDS AKRSALLAVM GLLMQSDNHW RVLAAGAVPI LLDLLRSGEI SGGLTADCLA TLAKLAEYPD GTIGVIRRGG
601: LKLAVKILSS SEDSPVAVKQ HCVGLILNLC LNGGRDVVGV LVKNSLVMGS LYTVLSNGEY GGSKKASALI RMIHEFQERK TGSVEPNLQR GRFVHAW

Arabidopsis Description

PUB18U-box domain-containing protein 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIJ5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.