Factsheet for PGSC0003DMT400077205

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g051090.1.1	Tomato	cytosol	77.17	93.24
VIT_13s0067g01460.t01	Wine grape	cytosol	71.43	70.49
KRH73275	Soybean	cytosol	50.22	66.99
PGSC0003DMT400078166	Potato	cytosol	36.52	37.52
PGSC0003DMT400001049	Potato	cytosol	36.38	37.2
PGSC0003DMT400019235	Potato	cytosol	34.02	37.02
PGSC0003DMT400015349	Potato	cytosol	31.52	33.08
PGSC0003DMT400078473	Potato	cytosol	31.37	32.77
PGSC0003DMT400027542	Potato	cytosol	16.94	32.3
PGSC0003DMT400075612	Potato	cytosol	30.63	32.25
PGSC0003DMT400071349	Potato	plastid	32.84	32.23
PGSC0003DMT400016998	Potato	cytosol	21.21	32.07
PGSC0003DMT400025648	Potato	cytosol	30.63	32.05
PGSC0003DMT400073254	Potato	cytosol	34.17	32.04
PGSC0003DMT400062931	Potato	cytosol	31.96	31.82
PGSC0003DMT400030161	Potato	cytosol	16.35	31.01
PGSC0003DMT400095861	Potato	cytosol, plasma membrane	24.74	30.0
PGSC0003DMT400082693	Potato	cytosol	10.6	29.51
PGSC0003DMT400090858	Potato	cytosol, mitochondrion	19.59	29.23
PGSC0003DMT400011486	Potato	cytosol	15.17	28.85
PGSC0003DMT400060674	Potato	plastid	18.41	27.72
PGSC0003DMT400034564	Potato	nucleus, plastid	18.56	27.51
PGSC0003DMT400039084	Potato	cytosol	17.08	26.19
PGSC0003DMT400027406	Potato	cytosol	10.16	25.84
PGSC0003DMT400046295	Potato	cytosol	30.19	24.97
PGSC0003DMT400026700	Potato	cytosol	28.42	24.81

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:102584299	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:M1CY16
PFAM:PF00514	PFAM:PF04564	EnsemblPlantsGene:PGSC0003DMG400030026	PGSC:PGSC0003DMG400030026	EnsemblPlants:PGSC0003DMT400077205	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF132	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniParc:UPI000294866C	InterPro:Ubox_domain	RefSeq:XP_006353434.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

Ubiquitin-protein ligase [Source:PGSC_GENE;Acc:PGSC0003DMG400030026]

Coordinates

chr6:+:29614395..29616700

Molecular Weight (calculated)

74431.8 Da

IEP (calculated)

7.460

GRAVY (calculated)

0.033

Length

679 amino acids

Sequence
(BLAST)

001: MNELIVSSVY PPTGNLLEAL IHISNEVFSM EKLPFVQMKN ISSMVRRIKI LTSLFEEIQE TSSAARLPPS SILCLAELSC VIQKVKLLIE ICKEGSSLWN
101: LMQTELISNQ FHALIKEMDN ALDILPLRLL NVTVDTKEQV ELLHKQAKRA DLFIDPRDIH KREEILQLMA TNCDRKSKNK GLIDFERVKQ SFNSIGLTTS
201: LDYEEEISKL ETQAEKQAGT GGLIAVSNIN SLISLISLSK TAILEEEHLM NKQNLKQTVS INVLPDQSSS CYSLVSDIPD ELRCPISLDL IRDPVIVASG
301: HTYDRNSIAQ WINSGHHTCP KSGQRLIHMA LIPNYALKSL IQQWCEDNNI PITEFKSTPS VSESSSSKIK KYDKAVDYIS ATKASTDAVK MTAEFLVGKL
401: ATGSPDIQRQ AAYELRLLAK SGMDNRRIIA ESGAIPFLMT LLGSRDPRIQ ENAVTALLNL SIHENNKILI MSAGAIDSLI GVLQSGKTME ARGNAAAAIF
501: SLSVIDEYKV IIGARTKAIP ALVGLLKDGT TAGKRDAAIA LFNLAVYDAN RQSIVLAGAV PLLIDLLMDD KAGITDDSLA VLALVLGCNE GLQALRKSRI
601: LVPLLVDLLR FGSSKGKDHS ITLLLGLCKD SGEEIAGRLL MNPRSIPSLQ SLAADGSLRA RRKADALLRL LNRCCFQSQ

Best Arabidopsis Sequence Match ( AT1G29340.1 )
(BLAST)

001: MASAAIFSSL RRRRSPSLEA FLAPVDLSGV ALVQTLASIS SEVVSCFTSV RFSFQRKNAR SLIRKIEIFV VLFEFLVDSN WGSTTTRTRA RRRSKSSVSE
101: STALLCLKEL YLLLYRSKIL VDYCAQSSKL WLLLQNPSIS GYFHDLNQEI STLLDVLPVN DLGLSDDIRE QIELLQRQSR KARLYIDKND ESLRESFYSF
201: LDGFENGKIP SSVDLRMFFV EKLGIRDSKS CRSEIEFLEE QIVNHDGDLE PTGSVINGFV AITRYCRFLL FGFEEDGMEW WIENNPKKPR KGFVAQEIGD
301: TFITVPKDFV CPISLDLMTD PVIISTGQTY DRNSIARWIE EGHCTCPKTG QMLMDSRIVP NRALKNLIVQ WCTASGISYE SEFTDSPNES FASALPTKAA
401: VEANKATVSI LIKYLADGSQ AAQTVAAREI RLLAKTGKEN RAYIAEAGAI PHLCRLLTSE NAIAQENSVT AMLNLSIYEK NKSRIMEEGD CLESIVSVLV
501: SGLTVEAQEN AAATLFSLSA VHEYKKRIAI VDQCVEALAL LLQNGTPRGK KDAVTALYNL STHPDNCSRM IEGGGVSSLV GALKNEGVAE EAAGALALLV
601: RQSLGAEAIG KEDSAVAGLM GMMRCGTPRG KENAVAALLE LCRSGGAAVA EKVLRAPAIA GLLQTLLFTG TKRARRKAAS LARVFQRREN AAMRSGVYGF
701: VGNTNGNRDG GFTTDVSVPI SISISVPVL

Arabidopsis Description

PUB17RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WA68]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.