Factsheet for PGSC0003DMT400071349

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g018230.1.1	Tomato	plastid	97.4	97.97
VIT_08s0058g01100.t01	Wine grape	plastid	66.47	67.95
KRH76105	Soybean	cytosol, plastid	60.98	60.11
KRH65448	Soybean	plastid	41.47	58.81
Bra001998.1-P	Field mustard	cytosol	50.14	58.12
CDX71307	Canola	cytosol	55.64	57.21
CDY31406	Canola	cytosol	55.64	57.12
Bra019022.1-P	Field mustard	cytosol	55.49	56.97
AT5G01830.1	Thale cress	plastid	55.49	56.97
GSMUA_Achr8P25140_001	Banana	plastid	31.79	52.38
GSMUA_Achr4P00200_001	Banana	plastid	46.53	45.74
TraesCS1A01G300000.1	Wheat	cytosol	43.79	45.36
Zm00001d043043_P001	Maize	cytosol	43.21	45.1
Zm00001d012494_P001	Maize	cytosol	43.21	45.1
Os01t0823900-01	Rice	plastid	43.93	44.71
TraesCS1B01G310100.1	Wheat	plastid	43.5	44.66
TraesCS1D01G299400.1	Wheat	cytosol, plastid	42.92	44.53
TraesCS3A01G345800.1	Wheat	plastid	43.5	44.07
HORVU1Hr1G069990.1	Barley	plastid	43.35	43.99
GSMUA_Achr7P22130_001	Banana	cytosol	40.17	43.92
HORVU3Hr1G081300.1	Barley	plastid	43.64	43.9
Zm00001d038471_P001	Maize	cytosol, plasma membrane, plastid	42.49	43.88
TraesCS3B01G377600.1	Wheat	plastid	43.5	43.81
OQU78182	Sorghum	plastid	42.92	43.74
TraesCS3D01G339600.1	Wheat	plastid	43.5	43.69
KXG33626	Sorghum	plastid	44.22	43.59
Os05t0476700-01	Rice	plastid	42.49	43.43
PGSC0003DMT400073254	Potato	cytosol	37.86	36.19
PGSC0003DMT400077205	Potato	cytosol	32.23	32.84
PGSC0003DMT400019235	Potato	cytosol	29.34	32.53
PGSC0003DMT400001049	Potato	cytosol	29.48	30.72
PGSC0003DMT400078166	Potato	cytosol	29.05	30.41
PGSC0003DMT400078473	Potato	cytosol	27.31	29.08
PGSC0003DMT400015349	Potato	cytosol	26.73	28.59
PGSC0003DMT400062931	Potato	cytosol	27.02	27.42
PGSC0003DMT400016998	Potato	cytosol	17.77	27.39
PGSC0003DMT400095861	Potato	cytosol, plasma membrane	21.39	26.43
PGSC0003DMT400025648	Potato	cytosol	24.57	26.19
PGSC0003DMT400011486	Potato	cytosol	13.15	25.49
PGSC0003DMT400075612	Potato	cytosol	23.27	24.96
PGSC0003DMT400039084	Potato	cytosol	15.46	24.15
PGSC0003DMT400090858	Potato	cytosol, mitochondrion	15.61	23.74
PGSC0003DMT400027542	Potato	cytosol	11.85	23.03
PGSC0003DMT400082693	Potato	cytosol	8.09	22.95
PGSC0003DMT400046295	Potato	cytosol	25.87	21.8
PGSC0003DMT400030161	Potato	cytosol	11.27	21.79
PGSC0003DMT400034564	Potato	nucleus, plastid	14.02	21.18
PGSC0003DMT400026700	Potato	cytosol	23.12	20.57
PGSC0003DMT400060674	Potato	plastid	13.29	20.4
PGSC0003DMT400027406	Potato	cytosol	7.8	20.22

Protein Annotations

EntrezGene:102598314	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-type_fold	InterPro:Armadillo	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009987	GO:GO:0010200	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR013083	UniProt:M1CNL4
PFAM:PF04564	EnsemblPlantsGene:PGSC0003DMG400027759	PGSC:PGSC0003DMG400027759	EnsemblPlants:PGSC0003DMT400071349	PFscan:PS50176	PFscan:PS51698
PANTHER:PTHR23315	PANTHER:PTHR23315:SF63	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI000294D275	InterPro:Ubox_domain	RefSeq:XP_006338118.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

U-box domain-containing protein 16 [Source:PGSC_GENE;Acc:PGSC0003DMG400027759]

Coordinates

chr5:-:28333788..28336132

Molecular Weight (calculated)

76225.1 Da

IEP (calculated)

8.621

GRAVY (calculated)

-0.021

Length

692 amino acids

Sequence
(BLAST)

001: MAVSPESFPP RKRRPSANCF VAPNLSDRNL LKSLLLLSSE ISTLRPLLFL LKRNTSSIIR KSKLLSVLFE EILGRDFTYS NDSNTSRGGH VTGFPPSAVL
101: CFDELYIVLQ RMKTLLEDCR NCSKMWLLMQ IDVFCNVFHE LTLELSTLLD ILPSKKLKLN DDVQELLILI TKQCSEKLAY VDPKDRDLRS QVVEMLDRIE
201: REIVPDQCKL AEIFEKLTLR DSTSCRDEIE LLEEEIQSQT DEKAKSDIIA LIGFVRYAKC VLYGGSTPRT NSRRRRAAAA MADVNVPADF RCPISLDLMR
301: DPVVVSTGQT YDRSSITLWF ESGHTTCPKT GQTLTHTDLI PNSALKNLIA MWCREQKIPF ESTEMNVKSN GVVTNKTALE ATRMTVSFLV NKLKASQVVE
401: SANRLVHELR VLAKTDSDSR ACIAEAAALP LMVKLLGSEH PSLQVNAVTT ILNLSILEAN KMRIMETDGV LNGVIDVLRS GATWEAKGNA AATIFSLSGV
501: PAYKKRLARK TRVVKGLMDL AREGPTNSKR DALVAILNLA GDRDAVGKLI EGGVVEMVAE IMDGLPEEAV TILEVVVKKG GLVAVAAAYP LMKKLAIVLR
601: DGTDRARESA AATLVNMCRK GGSEMVAELA GVQGIERVIW EIMGMGTGRG RRKAATLLRV LRRWAAGLDA EVASGAYSDV NMNTSTRIVL PG

Best Arabidopsis Sequence Match ( AT5G01830.1 )
(BLAST)

001: MAVTLDSPSP ARKRRPLVVG SFESPKLSSD TKLTRSLFLA SHEISSMQPL PFILRRNSLS LIRKVKILAS VFDELLLPRS QLVVYSQSAH LCFEEMQIVM
101: QRIKSLIDDC SRVSKLWLLL QIDIVAFNFH ELVTDLSTVL DILPLHDFDL SDDAQDLISL LTKQCSDSVQ FVDARDVALR RKVTDTIAGI KHQISPDHST
201: LIKIFNDLGL SDSASLTDEI QRLEDEIQDQ IDDRSKSAAA SLIGLVRYSK CVLYGPSTPA PDFRRHQSLS DANIPADFRC PITLELMRDP VVVATGQTYD
301: RESIDLWIQS GHNTCPKTGQ VLKHTSLVPN RALKNLIVLW CRDQKIPFEL YGDGGGEPAP CKEAVEFTKM MVSFLIEKLS VADSNGVVFE LRALAKSDTV
401: ARACIAEAGA IPKLVRYLAT ECPSLQINAV TTILNLSILE QNKTRIMETD GALNGVIEVL RSGATWEAKA NAAATLFSLA GVSAYRRRLG RKARVVSGLV
501: DLAKQGPTSS KRDALVAILN LVAERENVGR FVEAGVMGAA GDAFQELPEE AVAVVEAVVR RGGLMAVSAA FSLIRLLGEV MREGADTTRE SAAATLVTMC
601: RKGGSELVAE MAAIPGIERV IWEMIGAGTA RGGRKAASLM RYLRRWAAGD THNTAAETQS IVVPTPSRIF SPVL

Arabidopsis Description

PUB16RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178UNI7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.