Factsheet for Zm00001d012494_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043043_P001	Maize	cytosol	93.36	93.36
KXG33626	Sorghum	plastid	93.21	88.03
Os01t0823900-01	Rice	plastid	85.67	83.53
TraesCS3A01G345800.1	Wheat	plastid	85.07	82.58
TraesCS3B01G377600.1	Wheat	plastid	84.92	81.95
TraesCS3D01G339600.1	Wheat	plastid	85.07	81.86
HORVU3Hr1G081300.1	Barley	plastid	83.86	80.81
Zm00001d038471_P001	Maize	cytosol, plasma membrane, plastid	72.85	72.09
GSMUA_Achr8P25140_001	Banana	plastid	37.56	59.29
GSMUA_Achr7P22130_001	Banana	cytosol	50.68	53.08
GSMUA_Achr4P00200_001	Banana	plastid	55.51	52.27
Bra001998.1-P	Field mustard	cytosol	40.42	44.89
CDX71307	Canola	cytosol	44.19	43.54
Bra019022.1-P	Field mustard	cytosol	44.19	43.47
Solyc09g018230.1.1	Tomato	plastid	45.1	43.46
CDY31406	Canola	cytosol	44.04	43.32
PGSC0003DMT400071349	Potato	plastid	45.1	43.21
AT5G01830.1	Thale cress	plastid	43.89	43.18
VIT_08s0058g01100.t01	Wine grape	plastid	43.89	42.98
KRH76105	Soybean	cytosol, plastid	42.68	40.31
KRH65448	Soybean	plastid	28.66	38.93
Zm00001d053544_P001	Maize	mitochondrion, plastid	35.14	33.05
Zm00001d016225_P001	Maize	plastid	35.9	32.65
Zm00001d016501_P001	Maize	cytosol	21.27	30.32
Zm00001d045632_P004	Maize	cytosol, mitochondrion	26.24	27.62
Zm00001d050308_P001	Maize	mitochondrion, plasma membrane	28.66	27.38
Zm00001d021978_P001	Maize	cytosol	14.78	27.07
Zm00001d006726_P001	Maize	cytosol	14.63	26.94
Zm00001d000381_P001	Maize	cytosol	25.34	26.33
Zm00001d020332_P001	Maize	cytosol	27.45	26.07
Zm00001d031263_P001	Maize	cytosol	25.34	26.05
Zm00001d030732_P001	Maize	cytosol	26.09	26.02
Zm00001d041548_P002	Maize	cytosol	26.09	25.74
Zm00001d014845_P001	Maize	cytosol	24.43	25.27
Zm00001d028623_P001	Maize	cytosol	27.3	24.93
Zm00001d021951_P001	Maize	plastid	16.59	23.66
Zm00001d006705_P001	Maize	plastid	15.38	21.98
Zm00001d035040_P007	Maize	mitochondrion	24.28	18.46
Zm00001d049708_P007	Maize	cytosol	23.38	17.57
Zm00001d003967_P001	Maize	plastid	11.61	17.11
Zm00001d042608_P002	Maize	cytosol	22.62	16.22

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A1D6G927	ProteinID:AQK99641.1	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315
PANTHER:PTHR23315:SF147	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000844E5DA
InterPro:Ubox_domain	EnsemblPlantsGene:Zm00001d012494	EnsemblPlants:Zm00001d012494_P001	EnsemblPlants:Zm00001d012494_T001	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

U-box domain-containing protein 16

Coordinates

chr8:+:175457337..175459328

Molecular Weight (calculated)

71266.1 Da

IEP (calculated)

5.857

GRAVY (calculated)

0.041

Length

663 amino acids

Sequence
(BLAST)

001: MAPAPPSPSD GELLRSLHRL ARDLSAAAET PAPFLRGALA SITRRSKLLA AAFDDLVPCA AAEDMPRSAS LCLREVLLVL QRFKALAADC AARSRMRLLL
101: RSDEIEEEVR ELHQDLATLL DLLPVVELGL AEDVMDLLDL ASRQCRRFAL SVQAEQALKA RVLALIQEIE REIVPERETL QEILEEVGIN DPASCSEEIE
201: SLEREISDRA SERWTDAMIA LVGLLRYAKC VLFSATPRPT DSRPDPEIDE EREPPAPPPD FRCPIALDVM RDPVVVASGQ TYDRESIFRW FDSGKSTCPK
301: TGQVLTILEL VPNTALKNLI SKWCRDNGVA MEIGEASKSE PAQAVAANKA ALEAARMTAS FLVKKLAVSF SPDAANRVVH EIRLLSKSGA DSRAFVGEAG
401: AVPLLVPLLY SEDAGLQLNA VTALLNLSIL EANKKRIMHA EGAVEAVAHT MSAGVTWRAK ENAAAAVLSL ASVHTYRRRL GRNLSIVEKL VHLARTGPTS
501: TKKDALAALL SLASERENVG KLVDAGVAQV ALSAISEEET AAAVLAALAK RGGAEAIVGI DGAVARLVAE MRRGTEWARE NATAALVLLC RRLGARAVTQ
601: VMAVPGVEWA IWELMGTGTE RARRKAASLG RICRRWAAAS TADGERGSVC PAASVVPPAM MAS

Best Arabidopsis Sequence Match ( AT5G01830.1 )
(BLAST)

001: MAVTLDSPSP ARKRRPLVVG SFESPKLSSD TKLTRSLFLA SHEISSMQPL PFILRRNSLS LIRKVKILAS VFDELLLPRS QLVVYSQSAH LCFEEMQIVM
101: QRIKSLIDDC SRVSKLWLLL QIDIVAFNFH ELVTDLSTVL DILPLHDFDL SDDAQDLISL LTKQCSDSVQ FVDARDVALR RKVTDTIAGI KHQISPDHST
201: LIKIFNDLGL SDSASLTDEI QRLEDEIQDQ IDDRSKSAAA SLIGLVRYSK CVLYGPSTPA PDFRRHQSLS DANIPADFRC PITLELMRDP VVVATGQTYD
301: RESIDLWIQS GHNTCPKTGQ VLKHTSLVPN RALKNLIVLW CRDQKIPFEL YGDGGGEPAP CKEAVEFTKM MVSFLIEKLS VADSNGVVFE LRALAKSDTV
401: ARACIAEAGA IPKLVRYLAT ECPSLQINAV TTILNLSILE QNKTRIMETD GALNGVIEVL RSGATWEAKA NAAATLFSLA GVSAYRRRLG RKARVVSGLV
501: DLAKQGPTSS KRDALVAILN LVAERENVGR FVEAGVMGAA GDAFQELPEE AVAVVEAVVR RGGLMAVSAA FSLIRLLGEV MREGADTTRE SAAATLVTMC
601: RKGGSELVAE MAAIPGIERV IWEMIGAGTA RGGRKAASLM RYLRRWAAGD THNTAAETQS IVVPTPSRIF SPVL

Arabidopsis Description

PUB16RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178UNI7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.