Factsheet for TraesCS3A01G345800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G339600.1	Wheat	plastid	99.12	98.26
TraesCS3B01G377600.1	Wheat	plastid	98.54	97.96
HORVU3Hr1G081300.1	Barley	plastid	97.36	96.66
Os01t0823900-01	Rice	plastid	87.85	88.24
Zm00001d043043_P001	Maize	cytosol	83.02	85.52
Zm00001d012494_P001	Maize	cytosol	82.58	85.07
KXG33626	Sorghum	plastid	84.92	82.62
TraesCS1A01G300000.1	Wheat	cytosol	76.13	77.84
GSMUA_Achr8P25140_001	Banana	plastid	36.9	60.0
GSMUA_Achr7P22130_001	Banana	cytosol	49.93	53.87
GSMUA_Achr4P00200_001	Banana	plastid	54.32	52.7
Bra001998.1-P	Field mustard	cytosol	38.65	44.22
Solyc09g018230.1.1	Tomato	plastid	43.92	43.6
PGSC0003DMT400071349	Potato	plastid	44.07	43.5
AT5G01830.1	Thale cress	plastid	42.75	43.32
VIT_08s0058g01100.t01	Wine grape	plastid	42.9	43.28
CDX71307	Canola	cytosol	42.31	42.94
Bra019022.1-P	Field mustard	cytosol	42.31	42.88
CDY31406	Canola	cytosol	42.17	42.73
KRH76105	Soybean	cytosol, plastid	42.02	40.88
KRH65448	Soybean	plastid	28.11	39.34
TraesCS6A01G190700.1	Wheat	plastid	35.29	33.24
TraesCS7A01G001900.1	Wheat	cytosol	23.43	30.19
TraesCS2A01G193000.1	Wheat	cytosol	14.93	28.25
TraesCS2A01G276400.1	Wheat	nucleus	18.59	27.61
TraesCS2A01G475600.1	Wheat	cytosol, plasma membrane	27.67	27.35
TraesCS5A01G078400.1	Wheat	cytosol	27.38	27.34
TraesCS4A01G498700.1	Wheat	plastid	25.33	27.33
TraesCS4A01G097700.1	Wheat	cytosol	28.26	26.99
TraesCS6A01G293600.1	Wheat	cytosol	25.04	26.68
TraesCS5A01G198800.1	Wheat	cytosol, plasma membrane	26.79	26.11
TraesCS7A01G293900.1	Wheat	cytosol	24.6	26.09
TraesCS7A01G549700.1	Wheat	cytosol	24.3	25.7
TraesCS2A01G190800.1	Wheat	cytosol	15.67	24.54
TraesCS3A01G390200.1	Wheat	cytosol	14.64	22.78
TraesCS3A01G410100.1	Wheat	cytosol	16.4	21.17
TraesCS3A01G521300.1	Wheat	cytosol	23.87	19.61
TraesCS3A01G410000.1	Wheat	cytosol	15.52	16.72

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514
PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF147	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS3A01G345800	EnsemblPlants:TraesCS3A01G345800.1	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	TIGR:cd16664	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3A:-:595059524..595061575

Molecular Weight (calculated)

72586.3 Da

IEP (calculated)

5.820

GRAVY (calculated)

0.057

Length

683 amino acids

Sequence
(BLAST)

001: MAKPRAVVTA AAPSTSYASA FLPPPASPCD GDLLRSLHRL ARDLSAADAP APFLRAAFAS VSRRARLLAA AFDDLLLCAA GEGGLPRSAS LCLREVLLVL
101: QRFKAVVADC AARSRTLLLL QSDETDAELR DLHHDLATLL DLLPVVELGL ADDVMDLLAL ASRQCRRCAS AAEPEPALKA TVLSLIEEIE REIVPERERL
201: EEILEEVGIN DPASCSDEIE SLEREIGDRA SERWTAAMIA LVGLLRYAKC VLFSATPRPS DSKADVDVED DGESPAPPPD LRCPISLDLM RDPVVAASGQ
301: TYDRESIDRW FSSGKSTCPK TGQVLANLEL VPNKSLKNLI SKWCRENGVA MEVCEASKSE QAQAVAANKA ALEVARMTAS FLVKKLSVSF SPDAANRVVH
401: EIRLLSKSGS DNRAFVGEAG AVPMLVPLLY SEDAGLQLNA VTALLNLSIL EANKKRIMHA DGAVEAVTHI MSSGTTWRAK ENAAAAVLSL ASVHTYRRRL
501: GRNPSVVEKL VHLVRTGPTS TKKDALAALL SLAGERENVG KLVEAGVAEA ALSAISDEET AAAVLAALAK RGGAEAIVSI DGAVARLVAE MRRGTEWARE
601: SATAALVLLC RRLGARAVTQ VMGVAGVEWA IWELMGTGTD RARRKAASLG RICRRWAAAS AADGERGAEC PASSVVPPAM MAS

Best Arabidopsis Sequence Match ( AT5G01830.1 )
(BLAST)

001: MAVTLDSPSP ARKRRPLVVG SFESPKLSSD TKLTRSLFLA SHEISSMQPL PFILRRNSLS LIRKVKILAS VFDELLLPRS QLVVYSQSAH LCFEEMQIVM
101: QRIKSLIDDC SRVSKLWLLL QIDIVAFNFH ELVTDLSTVL DILPLHDFDL SDDAQDLISL LTKQCSDSVQ FVDARDVALR RKVTDTIAGI KHQISPDHST
201: LIKIFNDLGL SDSASLTDEI QRLEDEIQDQ IDDRSKSAAA SLIGLVRYSK CVLYGPSTPA PDFRRHQSLS DANIPADFRC PITLELMRDP VVVATGQTYD
301: RESIDLWIQS GHNTCPKTGQ VLKHTSLVPN RALKNLIVLW CRDQKIPFEL YGDGGGEPAP CKEAVEFTKM MVSFLIEKLS VADSNGVVFE LRALAKSDTV
401: ARACIAEAGA IPKLVRYLAT ECPSLQINAV TTILNLSILE QNKTRIMETD GALNGVIEVL RSGATWEAKA NAAATLFSLA GVSAYRRRLG RKARVVSGLV
501: DLAKQGPTSS KRDALVAILN LVAERENVGR FVEAGVMGAA GDAFQELPEE AVAVVEAVVR RGGLMAVSAA FSLIRLLGEV MREGADTTRE SAAATLVTMC
601: RKGGSELVAE MAAIPGIERV IWEMIGAGTA RGGRKAASLM RYLRRWAAGD THNTAAETQS IVVPTPSRIF SPVL

Arabidopsis Description

PUB16RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178UNI7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.