Factsheet for TraesCS3A01G410100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G443500.1	Wheat	cytosol	90.93	90.93
TraesCS3B01G443200.1	Wheat	cytosol, endoplasmic reticulum	32.89	68.5
GSMUA_Achr9P12570_001	Banana	cytosol	30.81	54.33
KRH17146	Soybean	cytosol	24.2	53.78
TraesCS3A01G390200.1	Wheat	cytosol	41.97	50.57
TraesCS3A01G410000.1	Wheat	cytosol	44.05	36.75
GSMUA_Achr4P01530_001	Banana	plasma membrane	40.45	35.02
PGSC0003DMT400027406	Potato	cytosol	16.64	32.96
TraesCS3A01G521300.1	Wheat	cytosol	51.42	32.73
Os08t0110500-01	Rice	plasma membrane	49.53	31.8
TraesCS2A01G193000.1	Wheat	cytosol	21.36	31.3
Zm00001d035040_P007	Maize	mitochondrion	48.96	29.7
CDX76873	Canola	cytosol, plastid	41.78	29.59
Zm00001d049708_P007	Maize	cytosol	48.39	29.02
TraesCS2A01G190800.1	Wheat	cytosol	23.63	28.67
Solyc01g014230.2.1	Tomato	cytosol	43.48	28.36
PGSC0003DMT400046295	Potato	cytosol	43.48	28.01
Solyc12g100000.1.1	Tomato	cytosol, plastid	43.1	27.84
CDY18649	Canola	cytosol, plastid	36.86	27.39
CDX81323	Canola	cytosol, plastid	37.24	27.25
VIT_07s0129g00590.t01	Wine grape	cytosol	43.67	27.24
KRH72794	Soybean	plasma membrane	41.4	26.94
KRG98177	Soybean	cytosol	42.72	26.87
AT2G23140.1	Thale cress	cytosol	41.97	26.78
KRH30135	Soybean	cytosol	42.34	26.73
Bra037117.1-P	Field mustard	cytosol, plastid	37.05	26.7
AT5G67340.1	Thale cress	cytosol	35.54	26.59
EES14396	Sorghum	cytosol	49.53	26.02
Bra012155.1-P	Field mustard	cytosol	31.0	24.89
CDY57440	Canola	cytosol	31.0	24.89
CDY12838	Canola	cytosol	32.33	24.46
TraesCS7A01G001900.1	Wheat	cytosol	24.39	24.34
CDY38931	Canola	cytosol	26.46	22.76
Bra032180.1-P	Field mustard	cytosol	24.76	22.43
TraesCS4A01G498700.1	Wheat	plastid	25.9	21.64
CDY46092	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	41.4	21.2
TraesCS6A01G293600.1	Wheat	cytosol	24.01	19.81
TraesCS5A01G078400.1	Wheat	cytosol	24.57	19.01
TraesCS2A01G276400.1	Wheat	nucleus	16.26	18.7
TraesCS4A01G097700.1	Wheat	cytosol	24.39	18.04
TraesCS7A01G293900.1	Wheat	cytosol	21.55	17.7
TraesCS7A01G549700.1	Wheat	cytosol	21.55	17.65
TraesCS1A01G300000.1	Wheat	cytosol	21.93	17.37
TraesCS3A01G345800.1	Wheat	plastid	21.17	16.4
TraesCS6A01G190700.1	Wheat	plastid	20.42	14.9
TraesCS2A01G475600.1	Wheat	cytosol, plasma membrane	19.28	14.76
TraesCS5A01G198800.1	Wheat	cytosol, plasma membrane	19.47	14.69

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:1.25.10.10	Gene3D:3.80.10.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000225	InterPro:IPR001810	InterPro:IPR011989	InterPro:IPR032675	InterPro:LRR_dom_sf	PFAM:PF00514
PFAM:PF12937	PFscan:PS50176	PFscan:PS50181	PANTHER:PTHR23315	PANTHER:PTHR23315:SF220	SMART:SM00185
SUPFAM:SSF48371	SUPFAM:SSF52047	SUPFAM:SSF81383	EnsemblPlantsGene:TraesCS3A01G410100	EnsemblPlants:TraesCS3A01G410100.1	SEG:seg

Description

No Description!

Coordinates

chr3A:+:654382577..654390413

Molecular Weight (calculated)

57637.8 Da

IEP (calculated)

6.736

GRAVY (calculated)

0.021

Length

529 amino acids

Sequence
(BLAST)

001: MPSSSSFVSA EAETRNWAEL PLDAISSILH KLGHVDILMG PGQACRSWRG AARDEPELWR RINMLGHADL SRQLNLHGMA QAAVRRSAGR CEAFWCEHAG
101: GHGFLLRLTD QAPSLKSLHL VSCYTSSDEA LTEAIVKFHL LEELELALCS NVGGSGVLGV VGKACPQLKS FRLIKDVLYD SEASDYDKDD EAMGIATMRG
201: LCSLQLFGNG LTNKGLTAIL DNCCHLEFLD IRHCFNVYMD NTLRTKCARI STLWLILPKL GDVGMREQFI RPQASDRGFP RIISSSSMDA RGDLSAIENQ
301: VHKLIDGLRS DSIEGQRSAT SEIRLLAKHN MENRIVIADC GAINLLVGLL HSPDAKIQEN AVTSLLNLSI SDNNKIAIMN AYAIDPLVHV LETGNPEAKE
401: NSAIALFYLS ILDENKGRIV QANAVKQLVE LMDPALGMID IAVAVLANLA TIPEGRTAIG QARGIPALVE VVELGSARGK ENVVAALLQL CKNSNRSCSI
501: VLREGVLPPL VTLSRSGTPR AREKVFYFR

Best Arabidopsis Sequence Match ( AT2G23140.1 )
(BLAST)

001: MVEMEVLLRS ISSFLNLSSS KHIDLDPFEK YYKRVEELLR VLKPIADVVV TSDFVFDEKL GKAFEELTQD VDQSIDLFRS WQAFSSKVYF VLQIESLLPK
101: MRDTIVDTFQ FLMSSKNHLP DELSPASLEQ CLEKIKHLSY EEISSVIDGA LRDQRDGVGP SPEILVKIGE NTGLRSNQEI LIEAVALERQ KEMAEQSENN
201: AEVEFLDQLI VIVNRMHERL LLIKQTQTSS VAILADFFCP LSLEVMTDPV IVSSGQTYEK AFIKRWIDLG LKVCPKTRQT LTHTTLIPNY TVKALIANWC
301: ETNDVKLPDP NKSTSLNELS PLLSCTDSIP STGADVSARK VSNKSHDWDA SSSETGKPSF SSRATEREGA SPSRPASALG ASSPGISGNG YGLDARRGSL
401: NDFEDRSNDS RELRTDAPGR SSVSSTTRGS VENGQTSENH HHRSPSATST VSNEEFPRAD ANENSEESAH ATPYSSDASG EIRSGPLAAT TSAATRRDLS
501: DFSPKFMDRR TRGQFWRRPS ERLGSRIVSA PSNETRRDLS EVETQVKKLV EELKSSSLDT QRQATAELRL LAKHNMDNRI VIGNSGAIVL LVELLYSTDS
601: ATQENAVTAL LNLSINDNNK KAIADAGAIE PLIHVLENGS SEAKENSAAT LFSLSVIEEN KIKIGQSGAI GPLVDLLGNG TPRGKKDAAT ALFNLSIHQE
701: NKAMIVQSGA VRYLIDLMDP AAGMVDKAVA VLANLATIPE GRNAIGQEGG IPLLVEVVEL GSARGKENAA AALLQLSTNS GRFCNMVLQE GAVPPLVALS
801: QSGTPRAREK AQALLSYFRN QRHGNAGRG

Arabidopsis Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F4ILG6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.