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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Predotar:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY57440 Canola cytosol 87.7 93.02
CDY18649 Canola cytosol, plastid 70.39 69.1
CDX81323 Canola cytosol, plastid 70.24 67.91
KRH17146 Soybean cytosol 18.88 55.46
TraesCS3B01G443200.1 Wheat cytosol, endoplasmic reticulum 19.46 53.54
GSMUA_Achr9P12570_001 Banana cytosol 22.89 53.33
GSMUA_Achr4P01530_001 Banana plasma membrane 40.63 46.48
CDX76873 Canola cytosol, plastid 47.93 44.85
CDY28679 Canola cytosol 16.17 42.97
Solyc01g014230.2.1 Tomato cytosol 47.35 40.81
VIT_07s0129g00590.t01 Wine grape cytosol 49.21 40.57
Solyc12g100000.1.1 Tomato cytosol, plastid 47.35 40.42
PGSC0003DMT400046295 Potato cytosol 47.35 40.32
KRH72794 Soybean plasma membrane 46.64 40.1
KRH30135 Soybean cytosol 47.21 39.38
TraesCS3A01G390200.1 Wheat cytosol 24.61 39.18
TraesCS3D01G382500.1 Wheat cytosol 24.75 39.14
TraesCS3B01G422200.1 Wheat cytosol 24.75 39.14
KRG98177 Soybean cytosol 47.07 39.12
HORVU3Hr1G081380.1 Barley cytosol 24.32 38.46
CDX78262 Canola cytosol 36.77 36.61
CDY38931 Canola cytosol 31.9 36.26
CDX73449 Canola cytosol 36.19 35.94
CDY32692 Canola peroxisome 18.03 35.69
CDX74298 Canola plastid 18.03 35.59
CDX91947 Canola plastid 17.88 35.41
CDY02828 Canola cytosol 17.88 35.31
Os08t0110500-01 Rice plasma membrane 41.34 35.07
CDY02891 Canola cytosol 36.91 35.01
CDY64696 Canola cytosol, extracellular, mitochondrion, plastid 36.48 34.55
TraesCS3B01G591000.1 Wheat cytosol 40.77 34.3
TraesCS3A01G521300.1 Wheat cytosol 40.63 34.18
TraesCS3D01G527900.1 Wheat cytosol 40.49 34.06
HORVU3Hr1G113910.3 Barley cytosol 40.49 33.77
EES01872 Sorghum cytosol 38.48 33.42
PGSC0003DMT400027406 Potato cytosol 12.73 33.33
Os01t0884400-01 Rice plasma membrane 39.2 32.7
Zm00001d035040_P007 Maize mitochondrion 40.49 32.45
CDY46092 Canola endoplasmic reticulum, golgi, plasma membrane, plastid 47.78 32.33
TraesCS3A01G410100.1 Wheat cytosol 24.46 32.33
CDX90518 Canola plastid 20.6 31.65
TraesCS3B01G443500.1 Wheat cytosol 23.89 31.57
Zm00001d049708_P007 Maize cytosol 39.63 31.41
CDY09688 Canola cytosol 20.17 31.06
CDX78273 Canola cytosol 27.9 30.76
CDX68379 Canola cytosol 28.61 30.4
CDX99112 Canola cytosol 28.33 30.23
CDX86080 Canola cytosol 28.18 30.03
CDY25764 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 25.04 29.76
CDX68380 Canola cytosol 22.6 29.7
CDY12497 Canola cytosol 25.04 29.31
CDY21412 Canola cytosol, endoplasmic reticulum 25.46 29.28
CDY04746 Canola cytosol, endoplasmic reticulum 25.46 29.23
Zm00001d042608_P002 Maize cytosol 38.48 29.08
CDX96295 Canola cytosol, plasma membrane 25.61 29.06
CDY31736 Canola cytosol 26.32 28.66
CDX72769 Canola cytosol 25.04 28.59
CDX74050 Canola cytosol 18.45 28.29
EES14396 Sorghum cytosol 40.49 28.1
CDY68352 Canola cytosol 18.31 28.07
CDX77213 Canola cytosol 25.75 27.99
CDY28059 Canola cytosol 18.31 27.71
CDY71737 Canola cytosol 18.31 27.71
CDY08002 Canola cytosol 18.03 27.69
CDY38506 Canola cytosol 17.88 27.41
CDX95193 Canola cytosol 25.61 27.33
CDY68037 Canola cytosol 25.46 27.18
TraesCS3A01G410000.1 Wheat cytosol 24.61 27.13
CDY04747 Canola cytosol, golgi 16.02 25.4
CDX99816 Canola plastid 25.46 24.59
CDY48332 Canola mitochondrion, plastid 24.61 24.43
CDY43332 Canola mitochondrion 25.04 24.34
CDX90186 Canola mitochondrion 24.75 24.26
CDY43686 Canola plastid 22.75 24.05
CDY37666 Canola cytosol, plastid 22.6 23.9
CDX94661 Canola plastid 23.46 23.07
CDX71307 Canola cytosol 21.75 22.59
CDY31406 Canola cytosol 21.75 22.55
CDX70810 Canola cytosol 14.88 22.03
CDX73439 Canola plastid 27.9 21.64
CDY51235 Canola extracellular, golgi 14.74 19.85
CDY55050 Canola cytosol 18.6 18.68
CDX93411 Canola mitochondrion 18.31 18.34
CDY54132 Canola cytosol 17.31 17.79
CDY24520 Canola cytosol 17.02 17.66
CDY04344 Canola cytosol 6.44 14.11
CDY04342 Canola cytosol 6.29 13.21
CDX70805 Canola cytosol 15.45 7.01
CDY51234 Canola cytosol 16.45 6.94
Protein Annotations
Gene3D:1.25.10.10MapMan:19.2.2.1.5.2.1Gene3D:3.30.40.10GO:A0A078FKY6UniProt:A0A078FKY6InterPro:ARM-like
InterPro:ARM-type_foldInterPro:ArmadilloEnsemblPlants:CDY12838ProteinID:CDY12838ProteinID:CDY12838.1ncoils:Coil
GO:GO:0003674GO:GO:0003824GO:GO:0004842GO:GO:0005488GO:GO:0005515GO:GO:0006464
GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016567GO:GO:0016740GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00070479001InterPro:IPR000225InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083PFAM:PF00514
PFAM:PF04564PFscan:PS50176PFscan:PS51698PANTHER:PTHR23315PANTHER:PTHR23315:SF7SMART:SM00185
SMART:SM00504SUPFAM:SSF48371SUPFAM:SSF57850UniPathway:UPA00143UniParc:UPI0004EB5EE6InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHDSEG:seg::::
Description
BnaC07g15950DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078FKY6]
Coordinates
chrLK032027:+:576158..578887
Molecular Weight (calculated)
76755.8 Da
IEP (calculated)
6.536
GRAVY (calculated)
-0.145
Length
699 amino acids
Sequence
(BLAST)
001: MEEVSRLRTL VDNISSYLSI SSSTNKLFSN PAHKYYSRGE EIAKLLMPFL DNLVASDASP NEFLNNGFEE LSQYIDELRE QFESWQPLSS RIFYVLRIES
101: LASKMRESSL EIFQLLKHLP GDLVSEDCIE LVKLVGREEV SYTIDRALID QRKGVELTPE VLLKIAESVG LRSNQDILIE GVVLTNLKED AKLVKNNIKA
201: GFIKGLMYLT KQMHDYLAKI EQSQLPSDFF CPLSLQLMTD PVTVASGQTY ERAFIEKWFD TGLMVCPKTR QALSQTTLTP NFTVKAFIAN WCESNNVNPP
301: DPLELIQSNQ PFPLLVGSGS RGSLPLPVMD DTLKCNHTES VDASKCEELH QVLTRSASAP GIVSKVVSKA NRSILQAPVE TVPQPCIIPA TIKETGSSSN
401: MEAEETGGSS SMEVEVKKLI QDLKSSSLDA QREATAQLRL LTKDIPDNRT VIARCGAIAA LVNKLYSMDK MIQADAVTCL LNLSLDDSNK TVIAYSGVFK
501: PLVHVLKTGN MEAKENSTRA LVSLSKAEEN RTKMLEAGAI EPLVRLMGNG SPRGKKDAAT ALTNLATRNK EKEMVIRGGG VRYLIQMMNP AAGTVERAVV
601: VLANLANVPE AKIAIRDGGG IPLLVEVVEL GSPRGQENAA AALCLLCMDS SRFCNTVIRE GAIPPLVALT RSGTARAKEK AKSLLKYFEA LKQENQRRS
Best Arabidopsis Sequence Match ( AT5G67340.2 )
(BLAST)
001: MMVHMEVSWL RVLLDNISSY LSLSSMDDLS SNPAHKYYTR GEDIGKLIKP VLENLIDSDA APSELLNNGF EELAQYVDEL REQFQSWQPL STRIFYVLRI
101: ESLASKLRES SLEVFQLLKH CEQHLPADLI SPSFEECIEL VKLVARDEIS YTIDQALKDQ KKGVGPTSEV LVKIAESTGL RSNQEILVEG VVLTNMKEDA
201: ELTDNDTEAE YLDGLISLTT QMHEYLSDIK QAQLRCPVRV PSDFRCSLSL ELMTDPVIVA SGQTFERVFI QKWIDMGLMV CPKTRQALSH TTLTPNFIVR
301: AFLASWCETN NVYPPDPLEL IHSSEPFPLL VESVRASSSE NGHSESLDAE ELRQVFSRSA SAPGIVSEVV CKTKRNNNAA ADRSLTRSNT PWKFPEERHW
401: RHPGIIPATV RETGSSSSIE TEVKKLIDDL KSSSLDTQRE ATARIRILAR NSTDNRIVIA RCEAIPSLVS LLYSTDERIQ ADAVTCLLNL SINDNNKSLI
501: AESGAIVPLI HVLKTGYLEE AKANSAATLF SLSVIEEYKT EIGEAGAIEP LVDLLGSGSL SGKKDAATAL FNLSIHHENK TKVIEAGAVR YLVELMDPAF
601: GMVEKAVVVL ANLATVREGK IAIGEEGGIP VLVEVVELGS ARGKENATAA LLQLCTHSPK FCNNVIREGV IPPLVALTKS GTARGKEKAQ NLLKYFKAHR
701: QSNQRRG
Arabidopsis Description
PUB2U-box domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5XEZ8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.