CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93411	Canola	mitochondrion	93.97	93.7
AT1G10560.1	Thale cress	cytosol	79.31	79.2
CDY24520	Canola	cytosol	60.63	62.61
CDY54132	Canola	cytosol	60.49	61.91
CDY04344	Canola	cytosol	26.01	56.74
CDY04342	Canola	cytosol	26.58	55.56
PGSC0003DMT400082693	Potato	cytosol	16.09	45.9
VIT_01s0026g00190.t01	Wine grape	cytosol	43.82	44.66
PGSC0003DMT400090858	Potato	cytosol, mitochondrion	29.02	44.4
PGSC0003DMT400095861	Potato	cytosol, plasma membrane	34.34	42.68
KRH69547	Soybean	cytosol, plastid	43.53	42.5
Solyc05g005670.1.1	Tomato	cytosol, mitochondrion	41.38	42.04
Zm00001d050308_P001	Maize	mitochondrion, plasma membrane	37.36	37.46
TraesCS2A01G475600.1	Wheat	cytosol, plasma membrane	36.64	36.9
TraesCS2B01G499300.1	Wheat	plasma membrane	35.78	36.14
TraesCS2D01G475600.1	Wheat	cytosol, plasma membrane	35.63	35.99
Os09t0378700-00	Rice	plasma membrane, plastid	36.64	35.81
OQU80426	Sorghum	endoplasmic reticulum, plasma membrane	36.64	35.71
TraesCS5A01G198800.1	Wheat	cytosol, plasma membrane	35.92	35.66
TraesCS5D01G204700.1	Wheat	cytosol, plasma membrane	35.78	35.52
TraesCS5B01G197400.1	Wheat	cytosol, plasma membrane, plastid	35.63	35.38
HORVU5Hr1G059280.1	Barley	cytosol, plasma membrane	35.63	35.38
Zm00001d020332_P001	Maize	cytosol	34.91	34.81
KXG35540	Sorghum	plasma membrane	35.06	34.08
Os08t0415600-00	Rice	cytosol	35.06	34.03
GSMUA_Achr9P14560_001	Banana	cytosol	28.59	34.02
GSMUA_Achr3P06160_001	Banana	plastid	25.57	31.39
CDY28679	Canola	cytosol	10.34	27.38
CDY25764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	22.7	26.87
CDY04747	Canola	cytosol, golgi	16.95	26.76
CDX68380	Canola	cytosol	20.4	26.69
CDY21412	Canola	cytosol, endoplasmic reticulum	22.84	26.15
CDY04746	Canola	cytosol, endoplasmic reticulum	22.84	26.11
CDY12497	Canola	cytosol	22.27	25.96
CDX86080	Canola	cytosol	23.99	25.46
CDX99112	Canola	cytosol	23.85	25.34
CDX68379	Canola	cytosol	23.85	25.23
CDY43686	Canola	plastid	23.85	25.11
CDX90186	Canola	mitochondrion	25.57	24.96
CDX96295	Canola	cytosol, plasma membrane	21.98	24.84
CDY43332	Canola	mitochondrion	25.57	24.76
CDX94661	Canola	plastid	25.29	24.75
CDY28059	Canola	cytosol	16.38	24.68
CDY37666	Canola	cytosol, plastid	23.42	24.66
CDX77213	Canola	cytosol	22.7	24.57
CDX72769	Canola	cytosol	21.55	24.51
CDY31736	Canola	cytosol	22.56	24.45
CDY48332	Canola	mitochondrion, plastid	24.71	24.43
CDY71737	Canola	cytosol	16.09	24.24
CDX74050	Canola	cytosol	15.8	24.12
CDX71307	Canola	cytosol	22.99	23.77
CDX99816	Canola	plastid	24.71	23.76
CDY31406	Canola	cytosol	22.99	23.74
CDX78273	Canola	cytosol	21.55	23.66
CDY08002	Canola	cytosol	15.37	23.52
CDX91947	Canola	plastid	11.64	22.95
CDX74298	Canola	plastid	11.64	22.88
CDY68352	Canola	cytosol	14.94	22.81
CDY68037	Canola	cytosol	21.12	22.44
CDY32692	Canola	peroxisome	11.35	22.38
CDY38506	Canola	cytosol	14.51	22.15
CDY02828	Canola	cytosol	11.21	22.03
CDX95193	Canola	cytosol	20.69	21.98
CDX78262	Canola	cytosol	20.4	20.23
CDX73449	Canola	cytosol	20.26	20.03
CDY64696	Canola	cytosol, extracellular, mitochondrion, plastid	20.83	19.65
CDX76873	Canola	cytosol, plastid	20.98	19.54
CDY02891	Canola	cytosol	20.69	19.54
CDY18649	Canola	cytosol, plastid	19.97	19.52
CDX81323	Canola	cytosol, plastid	20.11	19.36
CDX70810	Canola	cytosol	12.79	18.86
CDY12838	Canola	cytosol	18.68	18.6
CDY57440	Canola	cytosol	17.39	18.36
CDY51235	Canola	extracellular, golgi	13.65	18.3
CDY38931	Canola	cytosol	15.8	17.89
CDY09688	Canola	cytosol	11.35	17.4
CDX90518	Canola	plastid	11.35	17.36
CDX73439	Canola	plastid	21.55	16.65
CDY46092	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	21.12	14.23
CDX70805	Canola	cytosol	13.94	6.29
CDY51234	Canola	cytosol	14.37	6.04

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	GO:A0A078IUH9	UniProt:A0A078IUH9	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	EnsemblPlants:CDY55050	ProteinID:CDY55050	ProteinID:CDY55050.1	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00015011001	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514
PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF116	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EED3F1	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

BnaCnng28090DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078IUH9]

Coordinates

chrLK033373:+:26020..28110

Molecular Weight (calculated)

76645.8 Da

IEP (calculated)

7.211

GRAVY (calculated)

-0.050

Length

696 amino acids

Sequence
(BLAST)

001: MIHTKTGSNR RILTFPAVQP CKSISVTTLL DSLIQLAGDI LTFKQKHFST NKRSFQKTIR QIQNLAIVLE EIRIRVGSPR RYFPGVSSLS EIHVIFQKLK
101: FLLEDCTRDG ARLCMLMSSD QVSDHLRVLT LSISTSLSAF PVSFVDLPSE VNEVIGLVVQ QAREHVVRPD SDDKKVIASV NGVLALFENR VIPDPDEINR
201: ILDRVGVRTW GDCLKEINFL GEEIDAERLE NKKKNNNSNA RVELLSSLMG FICYCRCVIL NKRDHHHHHH HDESELRVHE DLIRGIKVED LLCPISLEIM
301: TDPVVIETGH TYDRSSITKW FGSGNITCPK TGKILTSTEL VDNVSVSHVI QKHCRANGVV LEINGRKRKS HGDVAPDSLA AKGAGRLIAR FLTSELLTNG
401: DEEMVYRALR EIRVLTKTGS FNRSCLVEAG CVSPLLNLLT SEDSRIQENA MAGLLNLSKH VAGKGEIAGE GLGIIVEILN EGAKTETRLY AASALFYLSS
501: VEDYSLLIGE HPDAIPGLMR IVTGDEYGDS AKRNALLAVM GLLMQSENHW RVLAAGAVPA LLDLLRDEET GGELTADCLA TLAKLAEYPD GTISVIRRGG
601: LKLAVKILSS SEVSPGVKQH CVGLVLNLCL NAGNDVVGVL VKDSVVMGSL YTVISNGEYG GSKKASALIR MIHEYQERKT GSVEPSFQRG RFIHAW

Best Arabidopsis Sequence Match ( AT1G10560.1 )
(BLAST)

001: MIHTKTGSGR RILTFPTVEP SESISIVTLL DSLIQLAGDI LTFKSKHFST NKQSFRETLR RIQNLLVVFE EIRIRIRNSR RYFHDSAAAS SLKEIHVGFQ
101: KLKFLLEDCT RDGARLCMMM NSDQVSDHLR VLTRSISTSL SAFPVASVDL TTEVNELIDL VVRQARKYGV QPETNDKRAV SSINRILALF VNRVVPDPDE
201: INRILDHVGI RKWGDCVKEI NFLGEEIDAE RLDEKKKKSS DQVELLSSLM GFICYCRCII LGRIERDDHH NHHEDGIKKD HDLIRGLKVE DLLCPISLEI
301: MTDPVVIETG HTYDRSSITK WFGSGNITCP ITGKILTSTE LVDNVSVRQV IRKHCKTNGI VLAGISRRRK SHDDVVPESL AAKGAGKLIA KFLTSELING
401: GEEMIYRAVR EIRVQTKTSS FNRSCLVKAG AVTPLLKLLS SVDIRIQENA MAGILNLSKH VTGKSKIAGE GLKILVEILN EGAKTETRLY SASALFYLSS
501: VEDYSRLIGE NPDAIPGLMN IVKGDDYGDS AKRSALLAVM GLLMQSDNHW RVLAAGAVPI LLDLLRSGEI SGGLTADCLA TLAKLAEYPD GTIGVIRRGG
601: LKLAVKILSS SEDSPVAVKQ HCVGLILNLC LNGGRDVVGV LVKNSLVMGS LYTVLSNGEY GGSKKASALI RMIHEFQERK TGSVEPNLQR GRFVHAW

Arabidopsis Description

PUB18U-box domain-containing protein 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIJ5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.