Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX99112 | Canola | cytosol | 97.41 | 97.56 |
| Bra018212.1-P | Field mustard | cytosol | 96.65 | 97.39 |
| CDX68379 | Canola | cytosol | 93.9 | 93.62 |
| CDX68380 | Canola | cytosol | 74.39 | 91.73 |
| AT3G46510.1 | Thale cress | cytosol | 91.16 | 90.61 |
| KRH29807 | Soybean | cytosol | 68.9 | 68.38 |
| VIT_06s0004g04530.t01 | Wine grape | cytosol | 71.04 | 68.33 |
| Solyc11g066040.1.1 | Tomato | cytosol | 68.45 | 67.72 |
| KRH24807 | Soybean | cytosol | 68.29 | 67.67 |
| PGSC0003DMT400001049 | Potato | cytosol | 67.84 | 67.02 |
| PGSC0003DMT400078166 | Potato | cytosol | 66.01 | 65.51 |
| Solyc06g076040.2.1 | Tomato | cytosol | 65.4 | 64.9 |
| CDY31736 | Canola | cytosol | 59.15 | 60.44 |
| CDX77213 | Canola | cytosol | 58.99 | 60.19 |
| Os12t0570000-01 | Rice | cytosol | 44.51 | 56.48 |
| GSMUA_Achr5P28670_001 | Banana | cytosol | 46.95 | 54.04 |
| GSMUA_Achr10P... | Banana | cytosol | 51.22 | 53.67 |
| OQU79384 | Sorghum | cytosol | 54.42 | 53.6 |
| Zm00001d030732_P001 | Maize | cytosol | 54.27 | 53.53 |
| Zm00001d041548_P002 | Maize | cytosol | 53.81 | 52.53 |
| GSMUA_Achr5P07140_001 | Banana | cytosol | 49.85 | 52.07 |
| HORVU5Hr1G021270.1 | Barley | cytosol | 53.81 | 51.76 |
| TraesCS5A01G078400.1 | Wheat | cytosol | 53.96 | 51.75 |
| TraesCS5B01G087500.1 | Wheat | cytosol | 53.51 | 51.47 |
| TraesCS5D01G093700.1 | Wheat | cytosol | 53.51 | 51.32 |
| HORVU5Hr1G021280.1 | Barley | cytosol | 53.81 | 51.31 |
| CDX78273 | Canola | cytosol | 49.54 | 51.26 |
| TraesCS4A01G097700.1 | Wheat | cytosol | 55.49 | 50.91 |
| GSMUA_Achr6P34170_001 | Banana | cytosol | 51.37 | 50.75 |
| Zm00001d028623_P001 | Maize | cytosol | 56.1 | 50.69 |
| Os03t0275900-01 | Rice | cytosol | 54.12 | 48.9 |
| OQU92820 | Sorghum | cytosol | 54.57 | 47.8 |
| TraesCS4B01G206900.1 | Wheat | plastid | 55.34 | 47.39 |
| HORVU4Hr1G059610.2 | Barley | cytosol | 55.64 | 47.28 |
| TraesCS4D01G207700.2 | Wheat | plastid | 55.18 | 46.59 |
| CDY25764 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 40.7 | 45.41 |
| CDY12497 | Canola | cytosol | 40.7 | 44.72 |
| CDY21412 | Canola | cytosol, endoplasmic reticulum | 41.01 | 44.24 |
| CDY04746 | Canola | cytosol, endoplasmic reticulum | 41.01 | 44.17 |
| CDX96295 | Canola | cytosol, plasma membrane | 40.24 | 42.86 |
| GSMUA_Achr10P... | Banana | cytosol | 55.79 | 42.36 |
| CDX72769 | Canola | cytosol | 39.33 | 42.16 |
| CDY28679 | Canola | cytosol | 16.31 | 40.68 |
| CDY04747 | Canola | cytosol, golgi | 26.83 | 39.91 |
| CDY68037 | Canola | cytosol | 39.79 | 39.85 |
| CDX95193 | Canola | cytosol | 39.79 | 39.85 |
| CDX73439 | Canola | plastid | 49.24 | 35.85 |
| CDX91947 | Canola | plastid | 18.45 | 34.28 |
| CDX74298 | Canola | plastid | 18.14 | 33.62 |
| CDX74050 | Canola | cytosol | 23.32 | 33.55 |
| CDY28059 | Canola | cytosol | 23.63 | 33.55 |
| CDY71737 | Canola | cytosol | 23.48 | 33.33 |
| CDY32692 | Canola | peroxisome | 17.84 | 33.14 |
| CDY02828 | Canola | cytosol | 17.84 | 33.05 |
| CDY08002 | Canola | cytosol | 22.71 | 32.75 |
| CDY68352 | Canola | cytosol | 22.26 | 32.02 |
| CDX90186 | Canola | mitochondrion | 34.15 | 31.42 |
| CDY38506 | Canola | cytosol | 21.65 | 31.14 |
| CDY43332 | Canola | mitochondrion | 33.84 | 30.88 |
| CDX76873 | Canola | cytosol, plastid | 34.6 | 30.39 |
| CDX94661 | Canola | plastid | 32.93 | 30.38 |
| CDY18649 | Canola | cytosol, plastid | 32.47 | 29.92 |
| CDX81323 | Canola | cytosol, plastid | 32.77 | 29.74 |
| CDX99816 | Canola | plastid | 32.62 | 29.56 |
| CDY48332 | Canola | mitochondrion, plastid | 31.4 | 29.26 |
| CDX78262 | Canola | cytosol | 30.64 | 28.63 |
| CDX73449 | Canola | cytosol | 30.49 | 28.41 |
| CDY12838 | Canola | cytosol | 30.03 | 28.18 |
| CDY02891 | Canola | cytosol | 31.1 | 27.68 |
| CDY57440 | Canola | cytosol | 27.74 | 27.62 |
| CDY64696 | Canola | cytosol, extracellular, mitochondrion, plastid | 30.95 | 27.51 |
| CDX90518 | Canola | plastid | 19.05 | 27.47 |
| CDY09688 | Canola | cytosol | 18.9 | 27.31 |
| CDY37666 | Canola | cytosol, plastid | 27.29 | 27.08 |
| CDY38931 | Canola | cytosol | 25.15 | 26.83 |
| CDY43686 | Canola | plastid | 26.98 | 26.78 |
| CDX70810 | Canola | cytosol | 18.9 | 26.27 |
| CDY31406 | Canola | cytosol | 26.68 | 25.96 |
| CDX71307 | Canola | cytosol | 26.52 | 25.85 |
| CDY55050 | Canola | cytosol | 25.46 | 23.99 |
| CDX93411 | Canola | mitochondrion | 25.46 | 23.93 |
| CDY54132 | Canola | cytosol | 24.54 | 23.68 |
| CDY24520 | Canola | cytosol | 24.24 | 23.59 |
| CDY51235 | Canola | extracellular, golgi | 18.6 | 23.51 |
| CDY46092 | Canola | endoplasmic reticulum, golgi, plasma membrane, plastid | 34.45 | 21.88 |
| CDY04344 | Canola | cytosol | 10.06 | 20.69 |
| CDY04342 | Canola | cytosol | 10.21 | 20.12 |
| CDX70805 | Canola | cytosol | 20.43 | 8.7 |
| CDY51234 | Canola | cytosol | 19.97 | 7.91 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:19.2.2.1.5.2.1 | Gene3D:3.30.40.10 | GO:A0A078DA27 | InterPro:ARM-like | InterPro:ARM-type_fold |
| InterPro:Armadillo | EnsemblPlants:CDX86080 | ProteinID:CDX86080 | ProteinID:CDX86080.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00144069001 | InterPro:IPR000225 |
| InterPro:IPR003613 | InterPro:IPR011989 | InterPro:IPR013083 | PFAM:PF00514 | PFAM:PF04564 | PFscan:PS50176 |
| PFscan:PS51698 | PANTHER:PTHR23315 | PANTHER:PTHR23315:SF235 | SMART:SM00185 | SMART:SM00504 | SUPFAM:SSF48371 |
| SUPFAM:SSF57850 | UniPathway:UPA00143 | UniParc:UPI0004EF17B8 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
BnaC03g55950D
Coordinates
chrLK031844:-:995356..997745
Molecular Weight (calculated)
71163.1 Da
IEP (calculated)
4.852
GRAVY (calculated)
-0.213
Length
656 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEEKGAVAQ SLIDVVTEIA SVSDYRITVK KLCSNLARRL KLLVPMFEEI RESNDPISED TLGTLVSLKE ALSSAKDHLK FCSGGSKIYL VMEREQVTSK
101: LLEVSVQLEQ SLSKIPYEDL DISDEVKEQV ELVLSQFRRA KGRVDASDDE LYQDLHSLCI KSSDVDDHQP ALQRVANKLQ LMEIPDLAQE SVALHEMVAL
201: SGGENNEEMA MVLKLIKDFV QMETDNSEDQ KVGVSNGQTS TAASQKIPPV IPDDFRCPIS LEMMRDPVIV STGQTYERTC IEKWIEAGHS TCPKTQQALT
301: STTLTPNYVL RSLIAQWCEA NDIEPPKPPS SFRPRKVSSF SSPAEANKIE DLMWRLAYGN PEDQRSAAGE IRLLAKRNAD NRVAIAEAGA IPLLVGLLAT
401: PDSRIQEHSV TALLNLSICE NNKGAIVSAG AIPGIVQVLK KGSMEARENA AATLFSLSVI DENKVTIGAL GAIPPLVVLL NEGTHRGKKD AATALFNLCI
501: YQGNKGKAIR AGVIPTLTRL LTETGSGMVD EALAILAILA SHPEGKSIIG SLDAVPSLVE FIRSGSPRNR ENAAAVLVHL SSTDPQHLVE AQKLGLMGPL
601: IDLAGNGTDR GKRKAAQLLE RISRLAEQQK ETAAHEQTKE EAEPTDSAST TEAADT
101: LLEVSVQLEQ SLSKIPYEDL DISDEVKEQV ELVLSQFRRA KGRVDASDDE LYQDLHSLCI KSSDVDDHQP ALQRVANKLQ LMEIPDLAQE SVALHEMVAL
201: SGGENNEEMA MVLKLIKDFV QMETDNSEDQ KVGVSNGQTS TAASQKIPPV IPDDFRCPIS LEMMRDPVIV STGQTYERTC IEKWIEAGHS TCPKTQQALT
301: STTLTPNYVL RSLIAQWCEA NDIEPPKPPS SFRPRKVSSF SSPAEANKIE DLMWRLAYGN PEDQRSAAGE IRLLAKRNAD NRVAIAEAGA IPLLVGLLAT
401: PDSRIQEHSV TALLNLSICE NNKGAIVSAG AIPGIVQVLK KGSMEARENA AATLFSLSVI DENKVTIGAL GAIPPLVVLL NEGTHRGKKD AATALFNLCI
501: YQGNKGKAIR AGVIPTLTRL LTETGSGMVD EALAILAILA SHPEGKSIIG SLDAVPSLVE FIRSGSPRNR ENAAAVLVHL SSTDPQHLVE AQKLGLMGPL
601: IDLAGNGTDR GKRKAAQLLE RISRLAEQQK ETAAHEQTKE EAEPTDSAST TEAADT
001: MEEEKASAAQ SLIDVVNEIA AISDYRITVK KLCYNLARRL KLLVPMFEEI RESNEPISED TLKTLMNLKE AMCSAKDYLK FCSQGSKIYL VMEREQVTSK
101: LMEVSVKLEQ SLSQIPYEEL DISDEVREQV ELVLSQFRRA KGRVDVSDDE LYEDLQSLCN KSSDVDAYQP VLERVAKKLH LMEIPDLAQE SVALHEMVAS
201: SGGDVGENIE EMAMVLKMIK DFVQTEDDNG EEQKVGVNSR SNGQTSTAAS QKIPVIPDDF RCPISLEMMR DPVIVSSGQT YERTCIEKWI EGGHSTCPKT
301: QQALTSTTLT PNYVLRSLIA QWCEANDIEP PKPPSSLRPR KVSSFSSPAE ANKIEDLMWR LAYGNPEDQR SAAGEIRLLA KRNADNRVAI AEAGAIPLLV
401: GLLSTPDSRI QEHSVTALLN LSICENNKGA IVSAGAIPGI VQVLKKGSME ARENAAATLF SLSVIDENKV TIGALGAIPP LVVLLNEGTQ RGKKDAATAL
501: FNLCIYQGNK GKAIRAGVIP TLTRLLTEPG SGMVDEALAI LAILSSHPEG KAIIGSSDAV PSLVEFIRTG SPRNRENAAA VLVHLCSGDP QHLVEAQKLG
601: LMGPLIDLAG NGTDRGKRKA AQLLERISRL AEQQKETAVS QPEEEAEPTH PESTTEAADT
101: LMEVSVKLEQ SLSQIPYEEL DISDEVREQV ELVLSQFRRA KGRVDVSDDE LYEDLQSLCN KSSDVDAYQP VLERVAKKLH LMEIPDLAQE SVALHEMVAS
201: SGGDVGENIE EMAMVLKMIK DFVQTEDDNG EEQKVGVNSR SNGQTSTAAS QKIPVIPDDF RCPISLEMMR DPVIVSSGQT YERTCIEKWI EGGHSTCPKT
301: QQALTSTTLT PNYVLRSLIA QWCEANDIEP PKPPSSLRPR KVSSFSSPAE ANKIEDLMWR LAYGNPEDQR SAAGEIRLLA KRNADNRVAI AEAGAIPLLV
401: GLLSTPDSRI QEHSVTALLN LSICENNKGA IVSAGAIPGI VQVLKKGSME ARENAAATLF SLSVIDENKV TIGALGAIPP LVVLLNEGTQ RGKKDAATAL
501: FNLCIYQGNK GKAIRAGVIP TLTRLLTEPG SGMVDEALAI LAILSSHPEG KAIIGSSDAV PSLVEFIRTG SPRNRENAAA VLVHLCSGDP QHLVEAQKLG
601: LMGPLIDLAG NGTDRGKRKA AQLLERISRL AEQQKETAVS QPEEEAEPTH PESTTEAADT
Arabidopsis Description
PUB13U-box domain-containing protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNC6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.