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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 2
  • cytosol 2
  • mitochondrion 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, plasma membrane, plastid
BaCelLo:plastid
iPSORT:plastid
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra031521.1-P Field mustard cytosol 98.96 98.52
CDY54132 Canola cytosol 94.96 94.12
CDY04344 Canola cytosol 37.83 79.94
CDY04342 Canola cytosol 38.72 78.38
AT1G60190.1 Thale cress cytosol, plastid 78.19 76.82
CDY55050 Canola cytosol 62.61 60.63
CDX93411 Canola mitochondrion 62.46 60.32
VIT_01s0026g00190.t01 Wine grape cytosol 44.81 44.22
PGSC0003DMT400082693 Potato cytosol 15.13 41.8
KRH69547 Soybean cytosol, plastid 44.21 41.8
Solyc05g005670.1.1 Tomato cytosol, mitochondrion 41.39 40.73
PGSC0003DMT400090858 Potato cytosol, mitochondrion 27.45 40.66
PGSC0003DMT400095861 Potato cytosol, plasma membrane 33.68 40.54
TraesCS2A01G475600.1 Wheat cytosol, plasma membrane 35.01 34.15
GSMUA_Achr9P14560_001 Banana cytosol 29.53 34.02
TraesCS2B01G499300.1 Wheat plasma membrane 34.72 33.96
Zm00001d020332_P001 Maize cytosol 35.16 33.95
Os09t0378700-00 Rice plasma membrane, plastid 35.76 33.85
KXG35540 Sorghum plasma membrane 35.61 33.52
TraesCS2D01G475600.1 Wheat cytosol, plasma membrane 34.12 33.38
TraesCS5D01G204700.1 Wheat cytosol, plasma membrane 34.72 33.38
HORVU5Hr1G059280.1 Barley cytosol, plasma membrane 34.57 33.24
TraesCS5B01G197400.1 Wheat cytosol, plasma membrane, plastid 34.42 33.1
Zm00001d050308_P001 Maize mitochondrion, plasma membrane 33.98 33.0
TraesCS5A01G198800.1 Wheat cytosol, plasma membrane 33.98 32.67
OQU80426 Sorghum endoplasmic reticulum, plasma membrane 34.12 32.21
GSMUA_Achr3P06160_001 Banana plastid 26.56 31.57
Os08t0415600-00 Rice cytosol 32.49 30.54
CDX71307 Canola cytosol 27.45 27.49
CDY31406 Canola cytosol 27.3 27.3
CDY43686 Canola plastid 26.56 27.08
CDY28679 Canola cytosol 10.53 27.0
CDY37666 Canola cytosol, plastid 25.96 26.48
CDX94661 Canola plastid 27.74 26.3
CDY48332 Canola mitochondrion, plastid 26.85 25.71
CDX90186 Canola mitochondrion 27.15 25.67
CDY43332 Canola mitochondrion 27.3 25.59
CDX68380 Canola cytosol 19.73 25.0
CDX99816 Canola plastid 26.71 24.86
CDY25764 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 21.66 24.83
CDY04747 Canola cytosol, golgi 16.17 24.72
CDY12497 Canola cytosol 21.51 24.29
CDX86080 Canola cytosol 23.59 24.24
CDY21412 Canola cytosol, endoplasmic reticulum 21.81 24.18
CDY04746 Canola cytosol, endoplasmic reticulum 21.81 24.14
CDX99112 Canola cytosol 23.15 23.82
CDX68379 Canola cytosol 23.15 23.71
CDX96295 Canola cytosol, plasma membrane 21.66 23.7
CDX74050 Canola cytosol 16.02 23.68
CDX77213 Canola cytosol 22.55 23.64
CDY28059 Canola cytosol 16.02 23.38
CDY31736 Canola cytosol 22.26 23.36
CDY08002 Canola cytosol 15.73 23.3
CDY68037 Canola cytosol 22.55 23.21
CDX72769 Canola cytosol 21.07 23.2
CDY71737 Canola cytosol 15.88 23.16
CDX95193 Canola cytosol 22.4 23.05
CDX78273 Canola cytosol 21.07 22.4
CDX91947 Canola plastid 11.57 22.1
CDX74298 Canola plastid 11.57 22.03
CDY02828 Canola cytosol 11.28 21.47
CDY32692 Canola peroxisome 10.98 20.96
CDY68352 Canola cytosol 13.95 20.61
CDY38506 Canola cytosol 13.65 20.18
CDY09688 Canola cytosol 13.06 19.38
CDX78262 Canola cytosol 20.18 19.37
CDX76873 Canola cytosol, plastid 21.22 19.14
CDY18649 Canola cytosol, plastid 20.03 18.96
CDX90518 Canola plastid 12.76 18.9
CDY64696 Canola cytosol, extracellular, mitochondrion, plastid 20.62 18.83
CDX81323 Canola cytosol, plastid 20.18 18.81
CDX73449 Canola cytosol 19.58 18.75
CDY02891 Canola cytosol 20.47 18.72
CDY38931 Canola cytosol 16.32 17.89
CDY57440 Canola cytosol 17.06 17.45
CDY12838 Canola cytosol 17.66 17.02
CDX70810 Canola cytosol 11.28 16.1
CDX73439 Canola plastid 21.07 15.76
CDY51235 Canola extracellular, golgi 11.87 15.41
CDY46092 Canola endoplasmic reticulum, golgi, plasma membrane, plastid 21.36 13.94
CDX70805 Canola cytosol 12.31 5.39
CDY51234 Canola cytosol 12.31 5.01
Protein Annotations
Gene3D:1.25.10.10MapMan:19.2.2.1.5.2.1Gene3D:3.30.40.10GO:A0A078GDF7UniProt:A0A078GDF7InterPro:ARM-like
InterPro:ARM-type_foldInterPro:ArmadilloEnsemblPlants:CDY24520ProteinID:CDY24520ProteinID:CDY24520.1GO:GO:0003674
GO:GO:0003824GO:GO:0004842GO:GO:0005488GO:GO:0005515GO:GO:0006464GO:GO:0008150
GO:GO:0008152GO:GO:0009987GO:GO:0016567GO:GO:0016740GO:GO:0019538EnsemblPlantsGene:GSBRNA2T00026828001
InterPro:IPR000225InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083PFAM:PF00514PFAM:PF04564
PFscan:PS50176PFscan:PS51698PANTHER:PTHR23315PANTHER:PTHR23315:SF116SMART:SM00185SMART:SM00504
SUPFAM:SSF48371SUPFAM:SSF57850UniPathway:UPA00143UniParc:UPI0004EEBEFEInterPro:Ubox_domainInterPro:Znf_RING/FYVE/PHD
SEG:seg:::::
Description
BnaA01g22240DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078GDF7]
Coordinates
chrLK032160:+:312663..314687
Molecular Weight (calculated)
74273.0 Da
IEP (calculated)
6.830
GRAVY (calculated)
-0.029
Length
674 amino acids
Sequence
(BLAST)
001: MIPTQNRRIL TFTAVHPCES VSITTLIDSL IKIAGEILSF KSKHFSTNKR SIKETLRHVL SLLIVFQEIR VGLIPADRSF PRSAILSLSE LHVIFQKLMF
101: LLEDCTREGG KLYMLINSDQ ISAHFRVLTR SISTCLDTFP VGSIDLPEEV NELIYLLIRQ TRKYEARPDR DDKRALDSVY WIFNLFENRI NPNRDEVVRV
201: LDHVGVRKWS DCVKEIGFLG EEITVEGKDK NEIELLSSLI GFISYCRCVI LGGVDEDEDK EEEDDLVIRG LNVDDLRCPI SLEIMNDPVV LETGHTYDRS
301: SIAKWFSAGN ITCPKTGKNL VSTVLVGNVS VKQLIQMYFK QETDNKSKKK KTSVPESLAA EEAGKLISDF LAGELINGGS KEMVKALVEI RILTKTSSFN
401: RSRLVEAGVV ESLMKLLRSG DPTIQENAMA VIFNLSKDNA GKVRIGGDGG GLGMIVEVLN EGARRESRQH AAAAIFYLSS LGDYSRSIGE IPDSIPGLLR
501: IVNGCDYGDS AKRNALIAIR SLLIQHSDNH WRVLAAGAVS VLLDLVRSGE IGDGAKADSI AVLAKIAEYP DGMISVLRRG GLKLAVKVLG SSEVSPVTKQ
601: HCVLLLLNLC VNGGSDVVGA LAKDPSVMGS LYTALSNGEC GGGRKASALI KMIHEFQERK TETGLERERF VHAW
Best Arabidopsis Sequence Match ( AT1G60190.1 )
(BLAST)
001: MIHTPTGSSR RILTFPAVNP CESISLTTLV DSLLQLAGEI LSFKPKHFST NKRSVKETLR HVQTLVIFFE ELRIQIRVGS IPAGRSVILS LSELHVIFQK
101: LKFLLDDCTR DGAKLYMLMN SGQVSAHFRD LTRSISTSLD TFPVRSVDLP GEVNELIYLV MRQTRKSEAR PDRDDKRAID SVYWFFNLFE NRINPNSDEI
201: LRVLDHIGVR KWRDCVKEID FLREEISVGK KSNIEIELLS NLMGFICYCR CVILRGIDVD DEEKDKEEDD LMMVRSLNVD DLRCPISLEI MSDPVVLESG
301: HTYDRSSITK WFASGNITCP KTGKTLVSTV LVDNFSVKQV IQSYSKQNGV VMGQKGKKKV DVAESLAAEE AGKLTAEFLA GELIKGDEEE MVKALVEIRI
401: LTKTSTFYRS CLVEAGVVES LMKILRSDDP RIQENAMAGI MNLSKDIAGK TRIVGEDGGG LRLIVEVLND GARRESRQYA AAALFYLSSL GDYSRLIGEI
501: SDAIPGLVRI VKSCDYGDSA KRNALIAIRS LLMNQPDNHW RILAAGIVPV LLDLVKSEEI SDGVTADSMA ILAKMAEYPD GMISVLRRGG LKLAVKILGS
601: SEVSPATKQH CVALLLNLCH NGGSDVVGSL AKNPSIMGSL YTASSNGELG GGKKASALIK MIHEFQERKT GPGEPVLERE RFVHAW
Arabidopsis Description
PUB19U-box domain-containing protein 19 [Source:UniProtKB/Swiss-Prot;Acc:O80742]
SUBAcon: [cytosol,plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.