Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04344 | Canola | cytosol | 93.39 | 97.49 |
| CDY24520 | Canola | cytosol | 78.38 | 38.72 |
| CDY54132 | Canola | cytosol | 77.48 | 37.94 |
| AT1G60190.1 | Thale cress | cytosol, plastid | 70.27 | 34.11 |
| CDX93411 | Canola | mitochondrion | 56.46 | 26.93 |
| CDY55050 | Canola | cytosol | 55.56 | 26.58 |
| KRH69547 | Soybean | cytosol, plastid | 41.74 | 19.5 |
| VIT_01s0026g00190.t01 | Wine grape | cytosol | 39.34 | 19.18 |
| Solyc05g005670.1.1 | Tomato | cytosol, mitochondrion | 36.94 | 17.96 |
| TraesCS2B01G499300.1 | Wheat | plasma membrane | 32.73 | 15.82 |
| TraesCS2A01G475600.1 | Wheat | cytosol, plasma membrane | 32.73 | 15.77 |
| OQU80426 | Sorghum | endoplasmic reticulum, plasma membrane | 33.63 | 15.69 |
| Os09t0378700-00 | Rice | plasma membrane, plastid | 33.33 | 15.59 |
| HORVU5Hr1G059280.1 | Barley | cytosol, plasma membrane | 32.73 | 15.55 |
| TraesCS2D01G475600.1 | Wheat | cytosol, plasma membrane | 32.13 | 15.53 |
| Zm00001d050308_P001 | Maize | mitochondrion, plasma membrane | 32.13 | 15.42 |
| TraesCS5D01G204700.1 | Wheat | cytosol, plasma membrane | 32.13 | 15.26 |
| KXG35540 | Sorghum | plasma membrane | 32.73 | 15.22 |
| Zm00001d020332_P001 | Maize | cytosol | 31.83 | 15.19 |
| TraesCS5A01G198800.1 | Wheat | cytosol, plasma membrane | 31.53 | 14.98 |
| TraesCS5B01G197400.1 | Wheat | cytosol, plasma membrane, plastid | 31.53 | 14.98 |
| Os08t0415600-00 | Rice | cytosol | 31.83 | 14.78 |
| CDY04747 | Canola | cytosol, golgi | 17.42 | 13.15 |
| PGSC0003DMT400095861 | Potato | cytosol, plasma membrane | 21.92 | 13.04 |
| CDX68380 | Canola | cytosol | 20.12 | 12.59 |
| CDY43686 | Canola | plastid | 24.62 | 12.41 |
| CDX71307 | Canola | cytosol | 24.92 | 12.33 |
| CDY31406 | Canola | cytosol | 24.62 | 12.17 |
| CDX94661 | Canola | plastid | 25.53 | 11.96 |
| CDY37666 | Canola | cytosol, plastid | 23.72 | 11.95 |
| CDY43332 | Canola | mitochondrion | 24.92 | 11.54 |
| CDX90186 | Canola | mitochondrion | 24.62 | 11.5 |
| CDY48332 | Canola | mitochondrion, plastid | 23.72 | 11.22 |
| PGSC0003DMT400090858 | Potato | cytosol, mitochondrion | 14.71 | 10.77 |
| GSMUA_Achr9P14560_001 | Banana | cytosol | 18.62 | 10.6 |
| CDX99816 | Canola | plastid | 22.82 | 10.5 |
| CDX86080 | Canola | cytosol | 20.12 | 10.21 |
| CDX68379 | Canola | cytosol | 20.12 | 10.18 |
| CDX99112 | Canola | cytosol | 19.52 | 9.92 |
| CDX77213 | Canola | cytosol | 18.62 | 9.64 |
| CDY21412 | Canola | cytosol, endoplasmic reticulum | 17.42 | 9.54 |
| CDY04746 | Canola | cytosol, endoplasmic reticulum | 17.42 | 9.52 |
| CDX96295 | Canola | cytosol, plasma membrane | 17.12 | 9.25 |
| CDY12497 | Canola | cytosol | 16.52 | 9.21 |
| CDY25764 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 16.22 | 9.18 |
| CDY31736 | Canola | cytosol | 17.42 | 9.03 |
| CDX95193 | Canola | cytosol | 17.72 | 9.01 |
| CDX74050 | Canola | cytosol | 12.31 | 8.99 |
| CDX78273 | Canola | cytosol | 17.12 | 8.99 |
| CDY68037 | Canola | cytosol | 17.42 | 8.85 |
| CDX72769 | Canola | cytosol | 16.22 | 8.82 |
| CDY08002 | Canola | cytosol | 12.01 | 8.79 |
| CDY28059 | Canola | cytosol | 12.01 | 8.66 |
| CDY71737 | Canola | cytosol | 12.01 | 8.66 |
| GSMUA_Achr3P06160_001 | Banana | plastid | 13.51 | 7.94 |
| CDY38931 | Canola | cytosol | 14.41 | 7.8 |
| CDX78262 | Canola | cytosol | 15.92 | 7.55 |
| CDX73449 | Canola | cytosol | 15.32 | 7.24 |
| CDX81323 | Canola | cytosol, plastid | 15.62 | 7.19 |
| CDY18649 | Canola | cytosol, plastid | 15.32 | 7.16 |
| CDX76873 | Canola | cytosol, plastid | 15.92 | 7.1 |
| CDY02891 | Canola | cytosol | 15.62 | 7.06 |
| CDY64696 | Canola | cytosol, extracellular, mitochondrion, plastid | 15.02 | 6.78 |
| CDX73439 | Canola | plastid | 17.12 | 6.33 |
| CDY12838 | Canola | cytosol | 13.21 | 6.29 |
| CDY57440 | Canola | cytosol | 12.31 | 6.22 |
| CDY68352 | Canola | cytosol | 7.81 | 5.7 |
| CDY38506 | Canola | cytosol | 7.21 | 5.26 |
| CDY46092 | Canola | endoplasmic reticulum, golgi, plasma membrane, plastid | 16.22 | 5.23 |
| CDY51235 | Canola | extracellular, golgi | 7.81 | 5.01 |
| CDX70810 | Canola | cytosol | 6.91 | 4.87 |
| CDY09688 | Canola | cytosol | 2.4 | 1.76 |
| CDX70805 | Canola | cytosol | 7.21 | 1.56 |
| CDX90518 | Canola | plastid | 2.1 | 1.54 |
| CDY51234 | Canola | cytosol | 7.21 | 1.45 |
| CDY32692 | Canola | peroxisome | 0.6 | 0.57 |
| CDX91947 | Canola | plastid | 0.6 | 0.57 |
| CDX74298 | Canola | plastid | 0.6 | 0.56 |
| CDY02828 | Canola | cytosol | 0.6 | 0.56 |
| PGSC0003DMT400082693 | Potato | cytosol | 0.0 | 0.0 |
| CDY28679 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078ETJ9 | EnsemblPlants:CDY04342 | ProteinID:CDY04342 | ProteinID:CDY04342.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00118211001 |
| InterPro:IPR003613 | InterPro:IPR013083 | PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR23315 | PANTHER:PTHR23315:SF116 |
| SMART:SM00504 | SUPFAM:SSF57850 | UniPathway:UPA00143 | UniParc:UPI0004EDE3B0 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
BnaC04g18510D
Coordinates
chrLK031952:+:38070..39149
Molecular Weight (calculated)
38668.9 Da
IEP (calculated)
7.457
GRAVY (calculated)
-0.249
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDRRILTFP AVHPCESISI TTLINSLLEI AGKILSFKSK HFSTSKGNAK ETFRHIHNLM VIFQEIRVRK LPACRSFPRS AILSLSELHV IFRKLKFLLQ
101: DCTREGAKLY MLINSDQVSS HFQLIYLLIC RTRKYEARPD RDDKRAIDSV YWIFNLFENR IKPNQDEVLR VLDHIGVRTW SYCVKEIGFL REEIRVEKKD
201: KNEIELLSSL IGFICYCRCV ILEGIDEDED KKEEEEEEEE EEEYVIIRGL KVDDLRCPIS LEIMNDLVVL ETGHTYDRSS ITKCFSAGNI TCPKTGKTLV
301: STVLVGNVSV KQVVHSYFEQ EIDHKSKKKK LSV
101: DCTREGAKLY MLINSDQVSS HFQLIYLLIC RTRKYEARPD RDDKRAIDSV YWIFNLFENR IKPNQDEVLR VLDHIGVRTW SYCVKEIGFL REEIRVEKKD
201: KNEIELLSSL IGFICYCRCV ILEGIDEDED KKEEEEEEEE EEEYVIIRGL KVDDLRCPIS LEIMNDLVVL ETGHTYDRSS ITKCFSAGNI TCPKTGKTLV
301: STVLVGNVSV KQVVHSYFEQ EIDHKSKKKK LSV
001: MIHTPTGSSR RILTFPAVNP CESISLTTLV DSLLQLAGEI LSFKPKHFST NKRSVKETLR HVQTLVIFFE ELRIQIRVGS IPAGRSVILS LSELHVIFQK
101: LKFLLDDCTR DGAKLYMLMN SGQVSAHFRD LTRSISTSLD TFPVRSVDLP GEVNELIYLV MRQTRKSEAR PDRDDKRAID SVYWFFNLFE NRINPNSDEI
201: LRVLDHIGVR KWRDCVKEID FLREEISVGK KSNIEIELLS NLMGFICYCR CVILRGIDVD DEEKDKEEDD LMMVRSLNVD DLRCPISLEI MSDPVVLESG
301: HTYDRSSITK WFASGNITCP KTGKTLVSTV LVDNFSVKQV IQSYSKQNGV VMGQKGKKKV DVAESLAAEE AGKLTAEFLA GELIKGDEEE MVKALVEIRI
401: LTKTSTFYRS CLVEAGVVES LMKILRSDDP RIQENAMAGI MNLSKDIAGK TRIVGEDGGG LRLIVEVLND GARRESRQYA AAALFYLSSL GDYSRLIGEI
501: SDAIPGLVRI VKSCDYGDSA KRNALIAIRS LLMNQPDNHW RILAAGIVPV LLDLVKSEEI SDGVTADSMA ILAKMAEYPD GMISVLRRGG LKLAVKILGS
601: SEVSPATKQH CVALLLNLCH NGGSDVVGSL AKNPSIMGSL YTASSNGELG GGKKASALIK MIHEFQERKT GPGEPVLERE RFVHAW
101: LKFLLDDCTR DGAKLYMLMN SGQVSAHFRD LTRSISTSLD TFPVRSVDLP GEVNELIYLV MRQTRKSEAR PDRDDKRAID SVYWFFNLFE NRINPNSDEI
201: LRVLDHIGVR KWRDCVKEID FLREEISVGK KSNIEIELLS NLMGFICYCR CVILRGIDVD DEEKDKEEDD LMMVRSLNVD DLRCPISLEI MSDPVVLESG
301: HTYDRSSITK WFASGNITCP KTGKTLVSTV LVDNFSVKQV IQSYSKQNGV VMGQKGKKKV DVAESLAAEE AGKLTAEFLA GELIKGDEEE MVKALVEIRI
401: LTKTSTFYRS CLVEAGVVES LMKILRSDDP RIQENAMAGI MNLSKDIAGK TRIVGEDGGG LRLIVEVLND GARRESRQYA AAALFYLSSL GDYSRLIGEI
501: SDAIPGLVRI VKSCDYGDSA KRNALIAIRS LLMNQPDNHW RILAAGIVPV LLDLVKSEEI SDGVTADSMA ILAKMAEYPD GMISVLRRGG LKLAVKILGS
601: SEVSPATKQH CVALLLNLCH NGGSDVVGSL AKNPSIMGSL YTASSNGELG GGKKASALIK MIHEFQERKT GPGEPVLERE RFVHAW
Arabidopsis Description
PUB19U-box domain-containing protein 19 [Source:UniProtKB/Swiss-Prot;Acc:O80742]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.