Factsheet for GSMUA_Achr3P06160_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P14560_001	Banana	cytosol	65.61	63.59
PGSC0003DMT400082693	Potato	cytosol	18.34	42.62
PGSC0003DMT400090858	Potato	cytosol, mitochondrion	31.57	39.34
TraesCS2A01G475600.1	Wheat	cytosol, plasma membrane	45.5	37.34
TraesCS2D01G475600.1	Wheat	cytosol, plasma membrane	44.44	36.57
TraesCS2B01G499300.1	Wheat	plasma membrane	44.09	36.28
Zm00001d050308_P001	Maize	mitochondrion, plasma membrane	43.03	35.16
OQU80426	Sorghum	endoplasmic reticulum, plasma membrane	44.09	35.01
Os09t0378700-00	Rice	plasma membrane, plastid	43.74	34.83
Zm00001d020332_P001	Maize	cytosol	42.15	34.24
HORVU5Hr1G059280.1	Barley	cytosol, plasma membrane	42.33	34.24
VIT_17s0000g08080.t01	Wine grape	cytosol, mitochondrion	40.92	34.17
VIT_01s0026g00190.t01	Wine grape	cytosol	41.09	34.11
TraesCS5A01G198800.1	Wheat	cytosol, plasma membrane	41.98	33.95
TraesCS5B01G197400.1	Wheat	cytosol, plasma membrane, plastid	41.8	33.81
TraesCS5D01G204700.1	Wheat	cytosol, plasma membrane	41.8	33.81
PGSC0003DMT400062931	Potato	cytosol	39.86	33.14
KXG35540	Sorghum	plasma membrane	41.8	33.1
Os08t0415600-00	Rice	cytosol	41.62	32.91
Solyc03g114160.1.1	Tomato	cytosol	39.33	32.7
KRH03317	Soybean	cytosol, plastid	38.62	32.4
GSMUA_Achr9P12570_001	Banana	cytosol	16.58	31.33
PGSC0003DMT400095861	Potato	cytosol, plasma membrane	30.86	31.25
Solyc05g005670.1.1	Tomato	cytosol, mitochondrion	37.57	31.09
KRH69547	Soybean	cytosol, plastid	38.98	31.0
KRH54418	Soybean	cytosol, plastid	37.21	30.89
GSMUA_Achr4P03430_001	Banana	cytosol	13.4	28.25
AT1G60190.1	Thale cress	cytosol, plastid	32.63	26.97
Bra031521.1-P	Field mustard	cytosol	31.75	26.59
CDY24520	Canola	cytosol	31.57	26.56
CDY54132	Canola	cytosol	31.39	26.18
GSMUA_Achr4P06990_001	Banana	plastid	18.52	26.05
GSMUA_Achr3P29830_001	Banana	cytosol	19.05	25.96
Bra019924.1-P	Field mustard	mitochondrion	31.75	25.9
CDY55050	Canola	cytosol	31.39	25.57
AT1G10560.1	Thale cress	cytosol	31.39	25.54
CDX93411	Canola	mitochondrion	31.39	25.5
GSMUA_Achr6P07710_001	Banana	cytosol	16.05	25.49
GSMUA_Achr4P11070_001	Banana	cytosol	18.52	24.88
GSMUA_Achr3P18890_001	Banana	cytosol	15.17	23.96
GSMUA_Achr10P...	Banana	cytosol	15.52	23.66
GSMUA_Achr4P14130_001	Banana	cytosol	14.46	23.63
GSMUA_Achr8P25140_001	Banana	plastid	17.28	23.33
GSMUA_Achr6P06560_001	Banana	cytosol	14.99	22.79
GSMUA_Achr1P22790_001	Banana	mitochondrion	18.17	22.74
GSMUA_Achr2P15530_001	Banana	mitochondrion	25.93	22.27
GSMUA_Achr7P26200_001	Banana	extracellular, golgi	16.23	22.22
GSMUA_Achr4P10960_001	Banana	endoplasmic reticulum	15.7	21.92
GSMUA_Achr3P00280_001	Banana	cytosol	22.57	21.23
GSMUA_Achr1P24290_001	Banana	cytosol	22.57	20.95
GSMUA_Achr9P28820_001	Banana	mitochondrion	22.05	20.87
GSMUA_Achr10P...	Banana	cytosol	13.76	20.86
GSMUA_Achr7P09440_001	Banana	mitochondrion	23.28	20.69
GSMUA_Achr9P01670_001	Banana	cytosol	16.23	19.74
GSMUA_Achr4P01530_001	Banana	plasma membrane	20.81	19.31
GSMUA_Achr7P22130_001	Banana	cytosol	21.52	19.27
GSMUA_Achr4P00200_001	Banana	plastid	23.63	19.03
GSMUA_Achr10P...	Banana	cytosol	20.99	19.01
GSMUA_Achr5P16030_001	Banana	cytosol	15.52	18.68
GSMUA_Achr10P...	Banana	mitochondrion	14.81	18.58
GSMUA_Achr6P36530_001	Banana	cytosol	21.52	18.48
GSMUA_Achr6P34170_001	Banana	cytosol	21.34	18.22
GSMUA_Achr4P05030_001	Banana	cytosol	16.4	17.75
GSMUA_Achr5P28670_001	Banana	cytosol	17.46	17.37
GSMUA_Achr4P04900_001	Banana	cytosol	16.05	17.23
GSMUA_Achr9P15600_001	Banana	cytosol	19.75	16.57
GSMUA_Achr5P21360_001	Banana	cytosol	20.63	15.41
GSMUA_Achr5P07140_001	Banana	cytosol	16.4	14.81
CDY04344	Canola	cytosol	7.76	13.79
CDY04342	Canola	cytosol	7.94	13.51
GSMUA_Achr10P...	Banana	cytosol	19.93	13.08

Protein Annotations

EnsemblPlants:GSMUA_Achr3P06160_001	EnsemblPlants:GSMUA_Achr3T06160_001	EnsemblPlantsGene:GSMUA_Achr3G06160_001	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	InterPro:IPR000225	InterPro:IPR011989
PANTHER:PTHR23315	PANTHER:PTHR23315:SF116	PFAM:PF00514	PFscan:PS50176	SEG:seg	SMART:SM00185
SUPFAM:SSF48371	UniParc:UPI0002949A4F	UniProt:M0SC83	MapMan:35.1	:	:

Description

Putative U-box domain-containing protein 19 [Source:GMGC_GENE;Acc:GSMUA_Achr3G06160_001]

Coordinates

chr3:-:4178177..4180306

Molecular Weight (calculated)

61783.6 Da

IEP (calculated)

9.615

GRAVY (calculated)

0.155

Length

567 amino acids

Sequence
(BLAST)

001: MGTPVKVAAY SLQIPSPFWI RCCLFVSIKM PRPSDRRRFL ALPVVQPGAN VRPSVLLDAL VVLADEILAL RACPFRVHRR SAREAIREVV TIREFLADVR
101: RRGSALPDSI VVGFSELYIT LQKLRHLLQD CARPGARLWV LMRSERVSSE FLVLVRSISA ALDVLPLASI DAVSEVKELI RFVEEQAWKA TIETEPDDAQ
201: AIRSVSSKLA NKDMVPNSAI RNLVEQFCQQ NNIRFPEPKA KQKRDVARTE KPLTSAAAGA MAMVAASLVD KLATGTNQEK NKAAHEIRKL SKSNIFNRAC
301: LVDAGLVPWL LQLFSSMDTS IQENAVAAVL NISKHPDGSR AIVEVGGLCL IVDVIRYALK SQARQNAVAI LFYLSSIEEY RIEIGKIPQA IPTLVELLRE
401: GTYRGRKNAV VALYMLLQAP DILPKALDAG AVPVLVALLS SEQEDLAGDA VGVLAKTAER HDGATAILES SAIPQLVEFL RSSTSRSGRE KCVSTLLSLC
501: DTGGAKVVRL LGQIPALLPS LYSLVAHGTS QARAKAISLV NCIQSLHGQG YPVIVASAAQ EHIIRAQ

Best Arabidopsis Sequence Match ( AT1G60190.1 )
(BLAST)

001: MIHTPTGSSR RILTFPAVNP CESISLTTLV DSLLQLAGEI LSFKPKHFST NKRSVKETLR HVQTLVIFFE ELRIQIRVGS IPAGRSVILS LSELHVIFQK
101: LKFLLDDCTR DGAKLYMLMN SGQVSAHFRD LTRSISTSLD TFPVRSVDLP GEVNELIYLV MRQTRKSEAR PDRDDKRAID SVYWFFNLFE NRINPNSDEI
201: LRVLDHIGVR KWRDCVKEID FLREEISVGK KSNIEIELLS NLMGFICYCR CVILRGIDVD DEEKDKEEDD LMMVRSLNVD DLRCPISLEI MSDPVVLESG
301: HTYDRSSITK WFASGNITCP KTGKTLVSTV LVDNFSVKQV IQSYSKQNGV VMGQKGKKKV DVAESLAAEE AGKLTAEFLA GELIKGDEEE MVKALVEIRI
401: LTKTSTFYRS CLVEAGVVES LMKILRSDDP RIQENAMAGI MNLSKDIAGK TRIVGEDGGG LRLIVEVLND GARRESRQYA AAALFYLSSL GDYSRLIGEI
501: SDAIPGLVRI VKSCDYGDSA KRNALIAIRS LLMNQPDNHW RILAAGIVPV LLDLVKSEEI SDGVTADSMA ILAKMAEYPD GMISVLRRGG LKLAVKILGS
601: SEVSPATKQH CVALLLNLCH NGGSDVVGSL AKNPSIMGSL YTASSNGELG GGKKASALIK MIHEFQERKT GPGEPVLERE RFVHAW

Arabidopsis Description

PUB19U-box domain-containing protein 19 [Source:UniProtKB/Swiss-Prot;Acc:O80742]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.