Factsheet for Solyc03g114160.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400062931	Potato	cytosol	93.55	93.55
VIT_17s0000g08080.t01	Wine grape	cytosol, mitochondrion	59.24	59.5
KRH03317	Soybean	cytosol, plastid	56.6	57.1
KRH54418	Soybean	cytosol, plastid	53.08	53.0
Solyc05g005670.1.1	Tomato	cytosol, mitochondrion	45.6	45.4
GSMUA_Achr9P14560_001	Banana	cytosol	35.92	41.88
GSMUA_Achr3P06160_001	Banana	plastid	32.7	39.33
Zm00001d050308_P001	Maize	mitochondrion, plasma membrane	38.42	37.75
TraesCS2A01G475600.1	Wheat	cytosol, plasma membrane	37.68	37.19
TraesCS2B01G499300.1	Wheat	plasma membrane	37.1	36.72
TraesCS2D01G475600.1	Wheat	cytosol, plasma membrane	36.95	36.57
OQU80426	Sorghum	endoplasmic reticulum, plasma membrane	38.27	36.55
Os09t0378700-00	Rice	plasma membrane, plastid	37.83	36.24
Zm00001d020332_P001	Maize	cytosol	36.95	36.1
HORVU5Hr1G059280.1	Barley	cytosol, plasma membrane	36.22	35.24
TraesCS5D01G204700.1	Wheat	cytosol, plasma membrane	35.78	34.81
TraesCS5A01G198800.1	Wheat	cytosol, plasma membrane	35.63	34.66
KXG35540	Sorghum	plasma membrane	36.36	34.64
TraesCS5B01G197400.1	Wheat	cytosol, plasma membrane, plastid	35.19	34.24
Os08t0415600-00	Rice	cytosol	35.63	33.89
Solyc11g008390.1.1	Tomato	cytosol	28.74	31.41
Solyc06g051090.1.1	Tomato	cytosol	25.81	31.32
Solyc12g094610.1.1	Tomato	cytosol	23.31	29.61
Solyc02g072080.1.1	Tomato	cytosol, mitochondrion	31.09	29.28
Solyc11g066040.1.1	Tomato	cytosol	28.45	29.26
Solyc12g088360.1.1	Tomato	cytosol	11.44	28.36
Solyc09g056450.2.1	Tomato	cytosol	18.62	28.29
Solyc05g008230.2.1	Tomato	cytosol	26.83	28.15
Solyc06g076040.2.1	Tomato	cytosol	27.27	28.14
Solyc04g007640.2.1	Tomato	cytosol	26.39	27.82
Solyc09g018230.1.1	Tomato	plastid	27.13	26.89
Solyc04g082440.2.1	Tomato	cytosol	25.07	26.35
Solyc04g050780.1.1	Tomato	cytosol	16.42	25.99
Solyc04g050770.1.1	Tomato	cytosol	16.13	24.83
Solyc04g077850.2.1	Tomato	cytosol	12.9	24.72
Solyc11g012440.1.1	Tomato	cytosol, plastid	15.69	23.31
Solyc04g014810.2.1	Tomato	plastid	15.25	23.06
Solyc09g025270.2.1	Tomato	cytosol	21.99	20.03
Solyc12g100000.1.1	Tomato	cytosol, plastid	24.05	20.02
Solyc01g014230.2.1	Tomato	cytosol	23.61	19.85

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:K4BKR8	PFAM:PF04564	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF161	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	EnsemblPlantsGene:Solyc03g114160.1	EnsemblPlants:Solyc03g114160.1.1	UniParc:UPI00027681BF	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:K4BKR8]

Coordinates

chr3:+:64176752..64178800

Molecular Weight (calculated)

76297.4 Da

IEP (calculated)

6.936

GRAVY (calculated)

-0.039

Length

682 amino acids

Sequence
(BLAST)

001: MIQRFDRNDR RILTFPAVHP CEGISPATLL NSLIILSRDI CNFKSNFFAT QRRNVREMIR QVGILLIFFE EILDHLPSDR DSIVLCFAEL HTTFQKINFL
101: LDDCTREGAK TWMLMKSHSV ASQFQVLVRT VATALDVLPL NSLNVSREIK ELVVMVANQA QRAKMELDPE DEEAVKRVIL LLNQFENKFQ PDPCVIKKFL
201: DYLDITTWAE CHKEIKFLED AINIECSENY EREVPMLSSL VGFLSYCRGI VFEDSVYGNT DQSDGSSNLE TLSCLDPEDF RCPISLELMT DPVTVSTGQT
301: YDRASIQKWL KSGNLLCPKT GETLQSTELV PNSSLRNLIQ QFCADNGISI AKSRKKNHDI SRTILPGNPA AAEAIKFLSE FLACRLYFGS DQQKTKAAYE
401: IRLLAKSNIF NRSVLIEAAT IPALLQMLCT NDTSMQEHSI SALLKLSKHS NGKKVIMENR GLNSILGVLK NGLKLESKQI AAAVIFYISS PREYRKLISE
501: NPEVFPALVD LINYGTSCGK KNAIVAMFGL LLSYRNHERA LGAGTVPALV NLLTSSDKVE LNTDALAVLA TLAERTEGSF AILEASALRV ILDQLQNTTS
601: RAGREYCVSI LLSLCVNSGA EVIASLVREK ALMPLLYSLL TEGTSQAKKR TRSLIKTLQR YCETSTSRLV SEVPQEQFID VR

Best Arabidopsis Sequence Match ( AT1G60190.1 )
(BLAST)

001: MIHTPTGSSR RILTFPAVNP CESISLTTLV DSLLQLAGEI LSFKPKHFST NKRSVKETLR HVQTLVIFFE ELRIQIRVGS IPAGRSVILS LSELHVIFQK
101: LKFLLDDCTR DGAKLYMLMN SGQVSAHFRD LTRSISTSLD TFPVRSVDLP GEVNELIYLV MRQTRKSEAR PDRDDKRAID SVYWFFNLFE NRINPNSDEI
201: LRVLDHIGVR KWRDCVKEID FLREEISVGK KSNIEIELLS NLMGFICYCR CVILRGIDVD DEEKDKEEDD LMMVRSLNVD DLRCPISLEI MSDPVVLESG
301: HTYDRSSITK WFASGNITCP KTGKTLVSTV LVDNFSVKQV IQSYSKQNGV VMGQKGKKKV DVAESLAAEE AGKLTAEFLA GELIKGDEEE MVKALVEIRI
401: LTKTSTFYRS CLVEAGVVES LMKILRSDDP RIQENAMAGI MNLSKDIAGK TRIVGEDGGG LRLIVEVLND GARRESRQYA AAALFYLSSL GDYSRLIGEI
501: SDAIPGLVRI VKSCDYGDSA KRNALIAIRS LLMNQPDNHW RILAAGIVPV LLDLVKSEEI SDGVTADSMA ILAKMAEYPD GMISVLRRGG LKLAVKILGS
601: SEVSPATKQH CVALLLNLCH NGGSDVVGSL AKNPSIMGSL YTASSNGELG GGKKASALIK MIHEFQERKT GPGEPVLERE RFVHAW

Arabidopsis Description

PUB19U-box domain-containing protein 19 [Source:UniProtKB/Swiss-Prot;Acc:O80742]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.