Factsheet for Solyc04g007640.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g110190.2.1
Solyc10g054080.1.1
Solyc11g044880.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71020.1	Solyc01g110190.2.1	AT4G39050.1	21798944
AT1G71020.1	Solyc10g054080.1.1	AT4G39050.1	21798944
AT1G71020.1	Solyc11g044880.1.1	AT4G39050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015349	Potato	cytosol	97.06	97.06
Solyc05g008230.2.1	Tomato	cytosol	73.72	73.38
VIT_01s0011g04770.t01	Wine grape	cytosol	67.85	68.7
KRG89279	Soybean	cytosol	64.14	63.75
KRH50347	Soybean	nucleus	64.14	63.46
AT1G23030.1	Thale cress	cytosol	57.34	60.62
CDY21412	Canola	cytosol, endoplasmic reticulum	56.88	60.53
Bra024559.1-P	Field mustard	cytosol, plasma membrane	56.88	60.43
CDY04746	Canola	cytosol, endoplasmic reticulum	56.88	60.43
AT1G71020.1	Thale cress	cytosol	58.58	60.35
CDY25764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	54.1	59.52
Bra012355.1-P	Field mustard	plasma membrane	53.94	59.35
CDY12497	Canola	cytosol	54.4	58.96
Bra016165.1-P	Field mustard	cytosol, plasma membrane	55.64	58.44
CDX96295	Canola	cytosol, plasma membrane	55.49	58.28
CDX72769	Canola	cytosol	54.1	57.19
CDY04747	Canola	cytosol, golgi	37.56	55.1
Zm00001d000381_P001	Maize	cytosol	51.31	52.04
EES07310	Sorghum	cytosol	51.0	51.72
TraesCS6D01G274500.1	Wheat	cytosol	50.08	50.55
TraesCS6A01G293600.1	Wheat	cytosol	49.92	50.39
TraesCS6B01G324000.1	Wheat	cytosol	50.08	50.39
Os02t0732200-01	Rice	cytosol	49.15	49.92
Solyc11g008390.1.1	Tomato	cytosol	44.2	45.83
GSMUA_Achr9P15600_001	Banana	cytosol	47.76	45.71
Solyc12g088360.1.1	Tomato	cytosol	18.86	44.36
Solyc11g066040.1.1	Tomato	cytosol	44.2	43.14
Solyc06g076040.2.1	Tomato	cytosol	42.66	41.75
HORVU6Hr1G073280.1	Barley	cytosol	50.08	40.35
Solyc12g094610.1.1	Tomato	cytosol	32.92	39.66
Solyc04g077850.2.1	Tomato	cytosol	20.25	36.8
Solyc09g056450.2.1	Tomato	cytosol	24.73	35.63
Solyc04g082440.2.1	Tomato	cytosol	35.7	35.59
Solyc06g051090.1.1	Tomato	cytosol	29.37	33.81
Solyc04g050780.1.1	Tomato	cytosol	20.56	30.86
Solyc04g050770.1.1	Tomato	cytosol	20.4	29.8
Solyc02g072080.1.1	Tomato	cytosol, mitochondrion	31.38	28.04
Solyc11g012440.1.1	Tomato	cytosol, plastid	19.32	27.23
Solyc04g014810.2.1	Tomato	plastid	18.7	26.83
Solyc09g018230.1.1	Tomato	plastid	28.13	26.45
Solyc03g114160.1.1	Tomato	cytosol	27.82	26.39
Solyc12g100000.1.1	Tomato	cytosol, plastid	33.08	26.13
Solyc09g025270.2.1	Tomato	cytosol	29.98	25.9
Solyc01g014230.2.1	Tomato	cytosol	32.3	25.77
Solyc05g005670.1.1	Tomato	cytosol, mitochondrion	25.5	24.09

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:K4BNS1	PFAM:PF00514
PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF52	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc04g007640.2	EnsemblPlants:Solyc04g007640.2.1	UniParc:UPI0002766BA1
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:K4BNS1]

Coordinates

chr4:+:1318689..1322070

Molecular Weight (calculated)

69933.4 Da

IEP (calculated)

8.286

GRAVY (calculated)

-0.101

Length

647 amino acids

Sequence
(BLAST)

001: MAGGELIAVA GDSTKIPLQV VHDVCRISGA GFAGFFKKDC TDLARRVSLL AYLLEEIRDS NTHLGSSSSS HDSCLYDLSI ALKAAKRLLL AANDFDPKIS
101: ADAERKKIVF QFQCVTWKLV KSLGSLPYDQ FDISEEVQEQ VELVRSQLTR AKERYGGPLA SYVLSRALSQ PLDKEIDPLQ SGSRGVGSLH LENVGNIDHE
201: VWPKLGGLPL GNTPNGNVCV QIVQEPENLR NSSKNSEVTS PKSPGLARED DSPSKKLVES KKPNSPIIPE EYLCPISLEL MRDPVIVATG QTYERSFIQR
301: WIDGGNTRCP KTQQILQDLT LTPNIALRSL ISDWCAKNNV EQPTALANGR IKRSDGSFRD VSGDIAAIEA IVRKLSSRST DDRRAAVAEI RSLSKRSTDN
401: RVLIAEAGAI PLLVNLLTSE DSQIQENAVT SILNLSIFGN NKGLIMLADA VPSIVQVLRA GSMEAKENAA ATIFSLSLGD ENKIIIGASG AIPALVELLQ
501: TGSTRGKKDA ATALFNLCIY QGNKGRAVRA GIIPVLLMML KDSSSCMVDE ALTILSVLAS HQEAKAAIAK ASTIPVLIDL LRTGLPRNKE NAAAILLSLC
601: KRDTVNLSCL RRLGALIPLT ELANTGTERA KRKATSLLEH LQKPLQP

Best Arabidopsis Sequence Match ( AT1G71020.1 )
(BLAST)

001: MAGGAITPDS LIGLIAEINE IPGNFGLFKK DCSDLARRVG LLTHLIEEIR DSSPPSESDA SSSLNSHECD WWSDLVVGLQ AAKRLLSSAT SFQARESSDG
101: AAKRISFQFQ CVTWKLEKAL GDLTYDRYDI SDEVREQVEL ARLQLRRAMQ RYGSLNSKKF SSGLSEPMEK DASSNRKVIE KLESIPETVH SLSDEKKFES
201: PPPWKSSSVS LAFFLSKDGD DERLEKAVTE NSDDSQKSDN LTIPEDFLCP ISLELMKDPA IVSTGQTYER SFIQRWIDCG NLSCPKTQQK LENFTLTPNY
301: VLRSLISQWC TKHNIEQPGG YMNGRTKNSD GSFRDLSGDM SAIRALVCKL SSQSIEDRRT AVSEIRSLSK RSTDNRILIA EAGAIPVLVK LLTSDGDTET
401: QENAVTCILN LSIYEHNKEL IMLAGAVTSI VLVLRAGSME ARENAAATLF SLSLADENKI IIGASGAIMA LVDLLQYGSV RGKKDAATAL FNLCIYQGNK
501: GRAVRAGIVK PLVKMLTDSS SERMADEALT ILSVLASNQV AKTAILRANA IPPLIDCLQK DQPRNRENAA AILLCLCKRD TEKLISIGRL GAVVPLMELS
601: RDGTERAKRK ANSLLELLRK SSRKLGSL

Arabidopsis Description

PUB10RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WJE0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.