Factsheet for GSMUA_Achr9P15600_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
cytosol 2
nucleus 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71020.1	GSMUA_Achr11P...	AT4G39050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0732200-01	Rice	cytosol	50.0	53.06
EES07310	Sorghum	cytosol	49.41	52.35
TraesCS6A01G293600.1	Wheat	cytosol	49.41	52.11
Zm00001d000381_P001	Maize	cytosol	48.96	51.88
TraesCS6D01G274500.1	Wheat	cytosol	49.11	51.79
TraesCS6B01G324000.1	Wheat	cytosol	49.26	51.79
VIT_01s0011g04770.t01	Wine grape	cytosol	46.6	49.3
KRG89279	Soybean	cytosol	47.19	49.0
KRH50347	Soybean	nucleus	47.04	48.62
CDY25764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	42.01	48.3
Bra012355.1-P	Field mustard	plasma membrane	41.86	48.13
AT1G71020.1	Thale cress	cytosol	44.67	48.09
PGSC0003DMT400015349	Potato	cytosol	46.01	48.07
Solyc04g007640.2.1	Tomato	cytosol	45.71	47.76
CDY12497	Canola	cytosol	42.01	47.57
PGSC0003DMT400078473	Potato	cytosol	45.27	47.08
AT1G23030.1	Thale cress	cytosol	42.31	46.73
Solyc05g008230.2.1	Tomato	cytosol	44.67	46.46
CDY21412	Canola	cytosol, endoplasmic reticulum	41.72	46.38
Bra024559.1-P	Field mustard	cytosol, plasma membrane	41.72	46.31
CDY04746	Canola	cytosol, endoplasmic reticulum	41.72	46.31
Bra016165.1-P	Field mustard	cytosol, plasma membrane	42.01	46.1
CDX96295	Canola	cytosol, plasma membrane	41.86	45.94
CDY04747	Canola	cytosol, golgi	29.59	45.35
CDX72769	Canola	cytosol	40.53	44.77
HORVU6Hr1G073280.1	Barley	cytosol	49.41	41.59
GSMUA_Achr3P00280_001	Banana	cytosol	34.91	39.14
GSMUA_Achr1P24290_001	Banana	cytosol	34.02	37.64
GSMUA_Achr10P...	Banana	cytosol	33.88	36.58
GSMUA_Achr5P28670_001	Banana	cytosol	30.62	36.32
GSMUA_Achr9P12570_001	Banana	cytosol	15.68	35.33
GSMUA_Achr6P34170_001	Banana	cytosol	33.73	34.34
GSMUA_Achr6P06560_001	Banana	cytosol	18.93	34.32
GSMUA_Achr10P...	Banana	cytosol	18.34	33.16
GSMUA_Achr4P04900_001	Banana	cytosol	25.74	32.95
GSMUA_Achr5P07140_001	Banana	cytosol	30.47	32.8
GSMUA_Achr4P03430_001	Banana	cytosol	13.02	32.71
GSMUA_Achr4P05030_001	Banana	cytosol	25.3	32.63
GSMUA_Achr9P01670_001	Banana	cytosol	22.04	31.97
GSMUA_Achr8P25140_001	Banana	plastid	19.53	31.43
GSMUA_Achr10P...	Banana	cytosol	16.57	30.11
GSMUA_Achr6P07710_001	Banana	cytosol	15.53	29.41
GSMUA_Achr10P...	Banana	cytosol	36.98	28.94
GSMUA_Achr4P01530_001	Banana	plasma membrane	25.15	27.82
GSMUA_Achr3P18890_001	Banana	cytosol	14.64	27.58
GSMUA_Achr4P14130_001	Banana	cytosol	14.05	27.38
GSMUA_Achr2P15530_001	Banana	mitochondrion	26.63	27.27
GSMUA_Achr7P22130_001	Banana	cytosol	24.7	26.38
GSMUA_Achr4P10960_001	Banana	endoplasmic reticulum	15.83	26.35
GSMUA_Achr4P06990_001	Banana	plastid	15.68	26.3
GSMUA_Achr6P36530_001	Banana	cytosol	25.44	26.06
GSMUA_Achr9P28820_001	Banana	mitochondrion	22.34	25.21
GSMUA_Achr3P29830_001	Banana	cytosol	15.24	24.76
GSMUA_Achr10P...	Banana	mitochondrion	16.27	24.34
GSMUA_Achr7P26200_001	Banana	extracellular, golgi	14.64	23.91
GSMUA_Achr4P11070_001	Banana	cytosol	14.79	23.7
GSMUA_Achr7P09440_001	Banana	mitochondrion	22.34	23.67
GSMUA_Achr1P22790_001	Banana	mitochondrion	15.68	23.4
GSMUA_Achr4P00200_001	Banana	plastid	24.11	23.15
GSMUA_Achr5P16030_001	Banana	cytosol	15.98	22.93
GSMUA_Achr5P21360_001	Banana	cytosol	25.74	22.92
GSMUA_Achr9P14560_001	Banana	cytosol	18.93	21.88
GSMUA_Achr3P06160_001	Banana	plastid	16.57	19.75

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr9G15600_001	EnsemblPlants:GSMUA_Achr9P15600_001
EnsemblPlants:GSMUA_Achr9T15600_001	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:M0U0L8
PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF52
SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI0002951F1B
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

U-box domain-containing protein 10 [Source:GMGC_GENE;Acc:GSMUA_Achr9G15600_001]

Coordinates

chr9:+:10315534..10319034

Molecular Weight (calculated)

75016.3 Da

IEP (calculated)

7.181

GRAVY (calculated)

0.070

Length

676 amino acids

Sequence
(BLAST)

001: MGPVLAAASA PSSLGASCLR LSRKISLLSH FLEEIWDFAA RSDDATPSLP PSEAACSSSS SSPPVDVTSC LADLLMALEA AKKCLLLGRR PRQDNASSDL
101: VEKNIDIQFQ YVTWQLEKVL GKIPYGNFGI SDEVQEQVEL IRAQLRRATV KSGTTNLKVF SEIYDMLSQT CGKELKLQRT SSSPELHIDD TVDGDHDFKD
201: IARIADSFIS AVNDDNQINL TSQMLEVFKR PVPLEIPEDF RCPISLELMK DPVIVSTGQT YERAYIQKWI DCGNRTCPKT QQKLQNLTLT PNYVLRSLIM
301: QWCELHKVEQ PRKTVSGWIR KSDGAFHEFT ADRVAIDVLV CNISSRSLED QRSAAAELRS LAKRSTDNRI LIAEAGAIPV LVKLLSADDH KIQEHAVTAL
401: LNLSIYEHNK ELIVLAGAIG PIIQVLRGGS MEARENAAAA IFSLSLIDDN KITIGTRAIR AGILSPLLKM LQEPLSNGMI DEALTILSVL VSHQEGKMAI
501: ARANTIPLLI DLLRTGQPRN KENAAAILLA LCKKDNENLA CIGRLGALIP LTELAKSGTD RAKRKATSLL EHLLKLIDVN YMSVYFFSLF DSLQKCARIV
601: KYLLLFSNLL CKINNWCCCS SFCFGYSLCI DGTICTIKIF VSLLYYLLCI HNLCASMVIW TCFFHDKIDG KYFYVV

Best Arabidopsis Sequence Match ( AT1G71020.1 )
(BLAST)

001: MAGGAITPDS LIGLIAEINE IPGNFGLFKK DCSDLARRVG LLTHLIEEIR DSSPPSESDA SSSLNSHECD WWSDLVVGLQ AAKRLLSSAT SFQARESSDG
101: AAKRISFQFQ CVTWKLEKAL GDLTYDRYDI SDEVREQVEL ARLQLRRAMQ RYGSLNSKKF SSGLSEPMEK DASSNRKVIE KLESIPETVH SLSDEKKFES
201: PPPWKSSSVS LAFFLSKDGD DERLEKAVTE NSDDSQKSDN LTIPEDFLCP ISLELMKDPA IVSTGQTYER SFIQRWIDCG NLSCPKTQQK LENFTLTPNY
301: VLRSLISQWC TKHNIEQPGG YMNGRTKNSD GSFRDLSGDM SAIRALVCKL SSQSIEDRRT AVSEIRSLSK RSTDNRILIA EAGAIPVLVK LLTSDGDTET
401: QENAVTCILN LSIYEHNKEL IMLAGAVTSI VLVLRAGSME ARENAAATLF SLSLADENKI IIGASGAIMA LVDLLQYGSV RGKKDAATAL FNLCIYQGNK
501: GRAVRAGIVK PLVKMLTDSS SERMADEALT ILSVLASNQV AKTAILRANA IPPLIDCLQK DQPRNRENAA AILLCLCKRD TEKLISIGRL GAVVPLMELS
601: RDGTERAKRK ANSLLELLRK SSRKLGSL

Arabidopsis Description

PUB10RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WJE0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.