Factsheet for GSMUA_Achr6P36530_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P21360_001	Banana	cytosol	76.82	66.8
GSMUA_Achr9P12570_001	Banana	cytosol	26.82	59.0
VIT_07s0005g03520.t01	Wine grape	cytosol	61.21	51.33
GSMUA_Achr4P01530_001	Banana	plasma membrane	46.67	50.41
PGSC0003DMT400026700	Potato	cytosol	55.0	46.66
Solyc09g025270.2.1	Tomato	cytosol	52.58	46.33
GSMUA_Achr4P03430_001	Banana	cytosol	18.64	45.72
CDX78262	Canola	cytosol	46.82	44.02
CDX73449	Canola	cytosol	46.67	43.75
Bra014787.1-P	Field mustard	cytosol	48.79	43.63
KRG95672	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	53.79	43.61
Bra007097.1-P	Field mustard	cytosol	46.36	43.59
CDY02891	Canola	cytosol	48.64	43.55
CDY64696	Canola	cytosol, extracellular, mitochondrion, plastid	48.64	43.5
AT3G54790.1	Thale cress	cytosol	48.94	42.5
GSMUA_Achr6P07710_001	Banana	cytosol	22.58	41.74
KRH67390	Soybean	cytosol, plastid	52.73	40.65
GSMUA_Achr3P18890_001	Banana	cytosol	21.82	40.11
GSMUA_Achr10P...	Banana	cytosol	22.27	39.52
GSMUA_Achr6P06560_001	Banana	cytosol	22.27	39.41
GSMUA_Achr10P...	Banana	cytosol	21.36	37.7
GSMUA_Achr4P14130_001	Banana	cytosol	19.55	37.18
KRH32190	Soybean	cytosol	37.27	37.1
GSMUA_Achr4P10960_001	Banana	endoplasmic reticulum	22.58	36.7
GSMUA_Achr9P01670_001	Banana	cytosol	25.3	35.84
GSMUA_Achr4P06990_001	Banana	plastid	21.52	35.24
GSMUA_Achr4P11070_001	Banana	cytosol	21.82	34.12
GSMUA_Achr7P26200_001	Banana	extracellular, golgi	21.21	33.82
GSMUA_Achr3P00280_001	Banana	cytosol	30.15	33.0
GSMUA_Achr3P29830_001	Banana	cytosol	20.76	32.93
GSMUA_Achr1P22790_001	Banana	mitochondrion	21.97	32.01
GSMUA_Achr5P16030_001	Banana	cytosol	22.27	31.21
GSMUA_Achr1P24290_001	Banana	cytosol	28.33	30.61
GSMUA_Achr10P...	Banana	cytosol	28.94	30.51
GSMUA_Achr8P25140_001	Banana	plastid	19.24	30.24
GSMUA_Achr6P34170_001	Banana	cytosol	30.0	29.82
GSMUA_Achr5P28670_001	Banana	cytosol	24.55	28.42
GSMUA_Achr4P05030_001	Banana	cytosol	22.42	28.24
GSMUA_Achr4P04900_001	Banana	cytosol	21.97	27.46
GSMUA_Achr5P07140_001	Banana	cytosol	25.0	26.27
GSMUA_Achr9P15600_001	Banana	cytosol	26.06	25.44
GSMUA_Achr2P15530_001	Banana	mitochondrion	25.0	25.0
GSMUA_Achr9P14560_001	Banana	cytosol	20.91	23.59
GSMUA_Achr9P28820_001	Banana	mitochondrion	20.91	23.04
GSMUA_Achr7P22130_001	Banana	cytosol	21.82	22.75
GSMUA_Achr4P00200_001	Banana	plastid	24.24	22.73
GSMUA_Achr7P09440_001	Banana	mitochondrion	21.97	22.73
GSMUA_Achr10P...	Banana	cytosol	29.39	22.45
GSMUA_Achr3P06160_001	Banana	plastid	18.48	21.52
GSMUA_Achr10P...	Banana	mitochondrion	14.09	20.58

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr6G36530_001	EnsemblPlants:GSMUA_Achr6P36530_001	EnsemblPlants:GSMUA_Achr6T36530_001	InterPro:IPR000225	InterPro:IPR003613
InterPro:IPR011989	InterPro:IPR013083	UniProt:M0TD95	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF119	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniParc:UPI000294CB9C	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

Putative U-box domain-containing protein 2 [Source:GMGC_GENE;Acc:GSMUA_Achr6G36530_001]

Coordinates

chr6:-:34466958..34471270

Molecular Weight (calculated)

72479.3 Da

IEP (calculated)

6.878

GRAVY (calculated)

-0.014

Length

660 amino acids

Sequence
(BLAST)

001: MDGDVTGGLI NSISRFIHLV ACQTTKSASL KDFRKIVGIL KLLRPVVDQV FDPELPFDEH LMKELEELDV AVNEARDLVE KGPQRMSKIY TVLQSEPILL
101: KVQKSALEIC HFSSALLQSS SLSAHIQELQ YAEQDTVSEL IDHALKDLKA NIIPSIEDLI KIMATLCLTS NQELLMESIA LEKERMKAEL KSKAEVVDHI
201: NQVIVLVTHI CYCIEKLEQF GVLNGHPVPS HFRCPLSLQL MLDPVIVASG QTYERSFIQK WLDSGLRICP RTRQTLAYIS LIPNYTVKVL ITDWCEEKKI
301: KLDKDCSYST DHQMMPSMVN MEADALVGKS GCHSHNESMS SVISSIGIMS KFEDNTWKFL LHSSNLDDLT TSHHVQKLTD GLKSESPELQ TAAASELRLL
401: AKHNMENRVL IGKFGAIPPL VSLLHSMGKK VQENAVTALL NLSINDDNKI LIAEAGAIGA LMHVLDSGTT EAKENSAAAL FTLSALEEYK AKIGRSGAAK
501: ALVHLLGSGN LRGRKDAAAA LFNLSIFHEN KVRIVQAGAV KYLVELMDPS SGMVDKSVAL LANLSTIPEG RMAIVQERGI PPLVEIVETG SARGRENAAS
601: TLSQLCLNSQ KICSLVLQEG VVPPLIALAQ FGTPRAKEKA QQILSHLRSQ REGIGRKAKS

Best Arabidopsis Sequence Match ( AT5G67340.2 )
(BLAST)

001: MMVHMEVSWL RVLLDNISSY LSLSSMDDLS SNPAHKYYTR GEDIGKLIKP VLENLIDSDA APSELLNNGF EELAQYVDEL REQFQSWQPL STRIFYVLRI
101: ESLASKLRES SLEVFQLLKH CEQHLPADLI SPSFEECIEL VKLVARDEIS YTIDQALKDQ KKGVGPTSEV LVKIAESTGL RSNQEILVEG VVLTNMKEDA
201: ELTDNDTEAE YLDGLISLTT QMHEYLSDIK QAQLRCPVRV PSDFRCSLSL ELMTDPVIVA SGQTFERVFI QKWIDMGLMV CPKTRQALSH TTLTPNFIVR
301: AFLASWCETN NVYPPDPLEL IHSSEPFPLL VESVRASSSE NGHSESLDAE ELRQVFSRSA SAPGIVSEVV CKTKRNNNAA ADRSLTRSNT PWKFPEERHW
401: RHPGIIPATV RETGSSSSIE TEVKKLIDDL KSSSLDTQRE ATARIRILAR NSTDNRIVIA RCEAIPSLVS LLYSTDERIQ ADAVTCLLNL SINDNNKSLI
501: AESGAIVPLI HVLKTGYLEE AKANSAATLF SLSVIEEYKT EIGEAGAIEP LVDLLGSGSL SGKKDAATAL FNLSIHHENK TKVIEAGAVR YLVELMDPAF
601: GMVEKAVVVL ANLATVREGK IAIGEEGGIP VLVEVVELGS ARGKENATAA LLQLCTHSPK FCNNVIREGV IPPLVALTKS GTARGKEKAQ NLLKYFKAHR
701: QSNQRRG

Arabidopsis Description

PUB2U-box domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5XEZ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.