CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95672	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	82.59	86.86
KRH32190	Soybean	cytosol	52.92	68.33
KRH17146	Soybean	cytosol	18.11	65.13
VIT_07s0005g03520.t01	Wine grape	cytosol	55.14	59.97
Solyc09g025270.2.1	Tomato	cytosol	47.31	54.07
PGSC0003DMT400026700	Potato	cytosol	48.83	53.73
CDX78262	Canola	cytosol	43.46	52.99
Bra007097.1-P	Field mustard	cytosol	43.34	52.85
GSMUA_Achr6P36530_001	Banana	cytosol	40.65	52.73
CDX73449	Canola	cytosol	43.34	52.7
Bra014787.1-P	Field mustard	cytosol	44.63	51.76
CDY64696	Canola	cytosol, extracellular, mitochondrion, plastid	44.51	51.63
CDY02891	Canola	cytosol	44.39	51.56
AT3G54790.1	Thale cress	cytosol	45.21	50.92
GSMUA_Achr5P21360_001	Banana	cytosol	44.04	49.67
KRH15451	Soybean	cytosol	14.72	46.49
KRH04403	Soybean	mitochondrion	18.81	44.48
KRH52088	Soybean	cytosol	16.0	41.9
KRH30135	Soybean	cytosol	40.07	40.93
KRH05594	Soybean	cytosol	16.82	40.91
KRG98177	Soybean	cytosol	39.84	40.55
KRH72794	Soybean	plasma membrane	37.15	39.11
KRH68828	Soybean	cytosol	18.57	36.98
KRG97080	Soybean	cytosol, nucleus	18.93	36.82
KRG91959	Soybean	cytosol	26.64	36.13
KRH34817	Soybean	cytosol	26.29	35.6
KRG99581	Soybean	cytosol	18.46	34.27
KRG92593	Soybean	cytosol	17.64	34.09
KRH46608	Soybean	cytosol	18.34	34.06
KRH00831	Soybean	cytosol	25.23	34.02
KRH40395	Soybean	cytosol	24.88	33.54
KRH01984	Soybean	cytosol	16.59	33.41
KRH51173	Soybean	cytosol	16.71	33.41
KRH11541	Soybean	plastid	17.41	32.6
KRH36562	Soybean	plastid	17.41	32.53
KRH29807	Soybean	cytosol	24.65	31.92
KRH24807	Soybean	cytosol	24.65	31.87
KRH33490	Soybean	cytosol	18.34	29.9
KRG89279	Soybean	cytosol	22.2	29.19
KRH50347	Soybean	nucleus	21.96	28.75
KRG99865	Soybean	cytosol	20.68	28.69
KRH73275	Soybean	cytosol	15.42	25.93
KRH11061	Soybean	mitochondrion, plastid	20.79	24.86
KRH59027	Soybean	mitochondrion	20.56	24.62
KRH42917	Soybean	mitochondrion	20.44	24.48
KRH21208	Soybean	mitochondrion	20.44	24.44
KRH03317	Soybean	cytosol, plastid	18.46	23.37
KRH54418	Soybean	cytosol, plastid	18.57	23.28
KRH76105	Soybean	cytosol, plastid	17.76	21.65
KRH69547	Soybean	cytosol, plastid	17.52	21.04
KRH65448	Soybean	plastid	11.8	20.7

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100782215	Gene3D:3.30.40.10	MapMan:35.1	EMBL:ACUP02002056	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	EnsemblPlantsGene:GLYMA_03G163900	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
UniProt:K7KFF3	EnsemblPlants:KRH67390	ProteinID:KRH67390	ProteinID:KRH67390.1	PFAM:PF00514	PFAM:PF04564
PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF119	SMART:SM00185	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000294E1E6	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

hypothetical protein

Coordinates

chr3:+:37848002..37853135

Molecular Weight (calculated)

94853.1 Da

IEP (calculated)

7.630

GRAVY (calculated)

-0.233

Length

856 amino acids

Sequence
(BLAST)

001: MHIGQINTSS VKCLVNSISR FIHLVSCQAV KPMPLQKNCN NMVCVLKHLK PVLDDIVDFK IPFDENLHRE CEELDMRVNE AREFIEKWGP KMSRIHSVLQ
101: SGELLIKLQN SSYKICHMIV KSLKGPASVL VSGNLQQYMQ ELQCLKKEPA MIYIEDALRN QRDNIEPCYD SLKEIIRLLM ISNQELLIES IAVEKERSNA
201: EVNKTKGDLD EINQIVNLVC SLRDYVMKFE RPEVKSGVSI PPYFRCPLSL ELMSDAVIVA SGQTYERQSI QKWLDHGLTV CPNTRQILVH TNLIPNYTVK
301: AMIANWCEEN NVKLPSNSKQ SNSSHISSPS DHLLHQDLDR LCSFESSASS DSNSNQIANA FEKPKDDNSF RSSRESDRSW NGETEKFEQQ SPAPSCSNSR
401: SESFSSSISS TDYVFPVLKE VSGISNKHQN VELSREITDG CPASPAYKES VIYPWLSGKQ FHSPGSKIGR MEDENKYNES NNISITSHSK VASHPVGSNE
501: LITTSHVNEL IEDLQSQSNE TQTAAAEQLR LCTKHNMENR ISVGRCGAIM PLLSLLYSER KIIQEHAVTA LLNLSINEGN KALIMEAGAI EPLIHVLKTG
601: NDGAKENSAA ALFSLSVIDN NKAKIGRSGA VKALVGLLAS GTLRGKKDSA TALFNLSIFH ENKARIVQAG AVKFLVLLLD PTDKMVDKAV ALLANLSTIA
701: EGRIEIAREG GIPSLVEIVE SGSLRGKENA ASILLQLCLH NQKFCTLVLQ EGAVPPLVAL SQSGTPRAKE KENSVQILVF NHGYRINLLK QCAKKSGILI
801: YVLQCILPPA LPPKTVKKHN SFSVIFVISV KESRGRGNHE DKAILIISLP FSLFPQ

Best Arabidopsis Sequence Match ( AT3G54790.3 )
(BLAST)

001: MDPVPVRCLL NSISRYLHLV ACQTIRFNPI QTCIGNMVLL LKLLKPLLDE VVDCKIPSDD CLYKGCEDLD SVVNQAREFL EDWSPKLSKL FGVFQCEVLL
101: GKVQTCSLEI SRILLQLSQS SPVTSSVQSV ERCVQETESF KQEGTLMELM ENALRNQKDD ITSLDNNHLE SIIQMLGLIS NQDLLKESIT VEKERIRSQA
201: SKSEEDMEQT EQLIELVLCI REHMLKTEFL EVAKGISIPP YFRCPLSTEL MLDPVIVASG QTFDRTSIKK WLDNGLAVCP RTRQVLTHQE LIPNYTVKAM
301: IASWLEANRI NLATNSCHQY DGGDASSMAN NMGSQDFNRT ESFRFSLRSS SLTSRSSLET GNGFEKLKIN VSASLCGESQ SKDLEIFELL SPGQSYTHSR
401: SESVCSVVSS VDYVPSVTHE TESILGNHQS SSEMSPKKNL ESSNNVNHEH SAAKTYECSV HDLDDSGTMT TSHTIKLVED LKSGSNKVKT AAAAEIRHLT
501: INSIENRVHI GRCGAITPLL SLLYSEEKLT QEHAVTALLN LSISELNKAM IVEVGAIEPL VHVLNTGNDR AKENSAASLF SLSVLQVNRE RIGQSNAAIQ
601: ALVNLLGKGT FRGKKDAASA LFNLSITHDN KARIVQAKAV KYLVELLDPD LEMVDKAVAL LANLSAVGEG RQAIVREGGI PLLVETVDLG SQRGKENAAS
701: VLLQLCLNSP KFCTLVLQEG AIPPLVALSQ SGTQRAKEKA QQLLSHFRNQ RDARMKKGRS

Arabidopsis Description

PUB3U-box domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWV5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.