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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid, extracellular, cytosol

Predictor Summary:
  • extracellular 2
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • mitochondrion 3
  • plastid 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, extracellular, mitochondrion, plastid
Any Predictor:cytosol, mitochondrion, secretory
BaCelLo:secretory
iPSORT:mitochondrion
MultiLoc:extracellular
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra014787.1-P Field mustard cytosol 99.46 99.46
CDY02891 Canola cytosol 96.88 97.01
CDX78262 Canola cytosol 82.38 86.61
CDX73449 Canola cytosol 82.11 86.08
AT3G54790.1 Thale cress cytosol 87.13 84.61
VIT_07s0005g03520.t01 Wine grape cytosol 56.5 52.99
CDY28679 Canola cytosol 17.75 49.81
GSMUA_Achr6P36530_001 Banana cytosol 43.5 48.64
PGSC0003DMT400026700 Potato cytosol 50.81 48.2
Solyc09g025270.2.1 Tomato cytosol 48.78 48.06
KRG95672 Soybean cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 52.71 47.79
GSMUA_Achr5P21360_001 Banana cytosol 46.61 45.32
KRH67390 Soybean cytosol, plastid 51.63 44.51
KRH32190 Soybean cytosol 37.53 41.78
CDX74298 Canola plastid 19.51 40.68
CDX91947 Canola plastid 19.38 40.51
CDY32692 Canola peroxisome 19.38 40.51
CDY02828 Canola cytosol 19.38 40.4
CDY18649 Canola cytosol, plastid 38.35 39.75
CDX76873 Canola cytosol, plastid 40.11 39.63
CDX81323 Canola cytosol, plastid 38.62 39.42
CDY57440 Canola cytosol 32.79 36.72
CDY12838 Canola cytosol 34.55 36.48
CDX78273 Canola cytosol 28.73 33.44
CDX90518 Canola plastid 20.19 32.75
CDY38931 Canola cytosol 27.24 32.68
CDY31736 Canola cytosol 28.32 32.55
CDY09688 Canola cytosol 19.78 32.16
CDX68379 Canola cytosol 28.05 31.46
CDX95193 Canola cytosol 27.91 31.45
CDX77213 Canola cytosol 27.37 31.42
CDY68037 Canola cytosol 27.78 31.3
CDX99112 Canola cytosol 27.64 31.14
CDX74050 Canola cytosol 19.24 31.14
CDY28059 Canola cytosol 19.38 30.95
CDY71737 Canola cytosol 19.38 30.95
CDX86080 Canola cytosol 27.51 30.95
CDY25764 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 24.39 30.61
CDY08002 Canola cytosol 18.83 30.55
CDX68380 Canola cytosol 21.82 30.26
CDY12497 Canola cytosol 24.25 29.98
CDY21412 Canola cytosol, endoplasmic reticulum 24.66 29.93
CDY04746 Canola cytosol, endoplasmic reticulum 24.66 29.89
CDX96295 Canola cytosol, plasma membrane 24.53 29.38
CDY68352 Canola cytosol 18.02 29.17
CDX72769 Canola cytosol 23.85 28.76
CDY46092 Canola endoplasmic reticulum, golgi, plasma membrane, plastid 40.11 28.65
CDY38506 Canola cytosol 17.21 27.85
CDY04747 Canola cytosol, golgi 14.91 24.94
CDY48332 Canola mitochondrion, plastid 23.71 24.86
CDX99816 Canola plastid 23.85 24.31
CDX94661 Canola plastid 22.9 23.77
CDX90186 Canola mitochondrion 22.9 23.7
CDY43332 Canola mitochondrion 23.04 23.64
CDY43686 Canola plastid 21.14 23.6
CDY37666 Canola cytosol, plastid 21.14 23.6
CDY31406 Canola cytosol 21.54 23.59
CDX73439 Canola plastid 28.73 23.53
CDX71307 Canola cytosol 21.41 23.48
CDX70810 Canola cytosol 14.63 22.88
CDY51235 Canola extracellular, golgi 15.04 21.39
CDY55050 Canola cytosol 19.65 20.83
CDY24520 Canola cytosol 18.83 20.62
CDX93411 Canola mitochondrion 19.24 20.34
CDY54132 Canola cytosol 18.43 20.0
CDY04344 Canola cytosol 6.91 15.99
CDY04342 Canola cytosol 6.78 15.02
CDX70805 Canola cytosol 15.31 7.33
CDY51234 Canola cytosol 16.4 7.3
Protein Annotations
Gene3D:1.25.10.10Gene3D:3.30.40.10MapMan:35.1GO:A0A078JGB0UniProt:A0A078JGB0InterPro:ARM-like
InterPro:ARM-type_foldInterPro:ArmadilloEnsemblPlants:CDY64696ProteinID:CDY64696ProteinID:CDY64696.1ncoils:Coil
GO:GO:0003674GO:GO:0003824GO:GO:0004842GO:GO:0005488GO:GO:0005515GO:GO:0006464
GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016567GO:GO:0016740GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00042564001InterPro:IPR000225InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083PFAM:PF00514
PFAM:PF04564PFscan:PS50176PFscan:PS51698PANTHER:PTHR23315PANTHER:PTHR23315:SF119SMART:SM00185
SMART:SM00504SUPFAM:SSF48371SUPFAM:SSF57850UniPathway:UPA00143UniParc:UPI0004EEB301InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHDSEG:seg::::
Description
BnaA04g27690DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078JGB0]
Coordinates
chrLK034524:+:9699..13226
Molecular Weight (calculated)
81394.4 Da
IEP (calculated)
6.114
GRAVY (calculated)
-0.241
Length
738 amino acids
Sequence
(BLAST)
001: MDPVLVRCLL NSISRYLHLV ACQTIRYKPI QTCIGNVVHL LKLLKPFLDD VVDCKVPPDD CLNSACEDLD SVVNQAREFL EDWSPKMSKL FGVFHSELLL
101: EKVQTCSLEI SRILVQLSQS SPVTSSVQGV EVNLLQRCMQ EIECFKQERT LSEHMKDTVP LDTDDLDSII HMMGLISNQD LLKESIAVEK ARIRSQTSKS
201: KEKMEQMDQL IDLVSCIREH MLKTEFLEVA KGVSIPPYFR CPLSTELMLD PVIVASGQTF DRTSIKKWLD NGLDVCPRTR QVLTHQELIP NYTVKAMIAS
301: WLEENSIKLP ANCDGGGDAS SMANNMGSND FNRTESFRFS LRSSSFTSRS SLETGNGFEK VKINVPASLC GESQCKDLEN FELSSSGQSY THSRSESVCS
401: VVSSVDYVPS VTNETQSIQE NHQSCSEMSP KKQNSESSSN VNHEYSECSS HTMKLVQDLK DGSSKEKTAA AAEIRQLTIN NVENRVQIGR CGAITPLLSL
501: LYSEEELTQE HAVTALLNLS ISEINKAMIA EAGATETLVH VLNTGNDRAK ENSAATLFSL SVLQVNRERI GQSNAAIQAL VNLLGKGTFR GKKDAASALF
601: NLSITHENKA RIVQAKAVKH LVELLDPELE MVDKAVALLA NLSAVGEGRQ AIVREGGIPL LVETVDSGSQ RGKENAASVL LQLCLNSPKF CTLVLQEGAI
701: PPLVALSQSG TQRAKEKAQQ LLSHFRNQRD ARMKKGRS
Best Arabidopsis Sequence Match ( AT3G54790.3 )
(BLAST)
001: MDPVPVRCLL NSISRYLHLV ACQTIRFNPI QTCIGNMVLL LKLLKPLLDE VVDCKIPSDD CLYKGCEDLD SVVNQAREFL EDWSPKLSKL FGVFQCEVLL
101: GKVQTCSLEI SRILLQLSQS SPVTSSVQSV ERCVQETESF KQEGTLMELM ENALRNQKDD ITSLDNNHLE SIIQMLGLIS NQDLLKESIT VEKERIRSQA
201: SKSEEDMEQT EQLIELVLCI REHMLKTEFL EVAKGISIPP YFRCPLSTEL MLDPVIVASG QTFDRTSIKK WLDNGLAVCP RTRQVLTHQE LIPNYTVKAM
301: IASWLEANRI NLATNSCHQY DGGDASSMAN NMGSQDFNRT ESFRFSLRSS SLTSRSSLET GNGFEKLKIN VSASLCGESQ SKDLEIFELL SPGQSYTHSR
401: SESVCSVVSS VDYVPSVTHE TESILGNHQS SSEMSPKKNL ESSNNVNHEH SAAKTYECSV HDLDDSGTMT TSHTIKLVED LKSGSNKVKT AAAAEIRHLT
501: INSIENRVHI GRCGAITPLL SLLYSEEKLT QEHAVTALLN LSISELNKAM IVEVGAIEPL VHVLNTGNDR AKENSAASLF SLSVLQVNRE RIGQSNAAIQ
601: ALVNLLGKGT FRGKKDAASA LFNLSITHDN KARIVQAKAV KYLVELLDPD LEMVDKAVAL LANLSAVGEG RQAIVREGGI PLLVETVDLG SQRGKENAAS
701: VLLQLCLNSP KFCTLVLQEG AIPPLVALSQ SGTQRAKEKA QQLLSHFRNQ RDARMKKGRS
Arabidopsis Description
PUB3U-box domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWV5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.