CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

nucleus 1
cytosol 2
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037117.1-P	Field mustard	cytosol, plastid	99.3	96.32
CDX81323	Canola	cytosol, plastid	97.61	96.13
AT5G67340.1	Thale cress	cytosol	79.07	79.63
CDY12838	Canola	cytosol	69.1	70.39
CDY57440	Canola	cytosol	64.19	69.35
KRH17146	Soybean	cytosol	23.17	69.33
TraesCS3B01G443200.1	Wheat	cytosol, endoplasmic reticulum	23.03	64.57
GSMUA_Achr9P12570_001	Banana	cytosol	25.42	60.33
GSMUA_Achr4P01530_001	Banana	plasma membrane	45.51	53.03
CDX76873	Canola	cytosol, plastid	53.23	50.74
CDY28679	Canola	cytosol	17.84	48.29
VIT_07s0129g00590.t01	Wine grape	cytosol	55.2	46.34
Solyc01g014230.2.1	Tomato	cytosol	52.53	46.12
Solyc12g100000.1.1	Tomato	cytosol, plastid	52.95	46.03
PGSC0003DMT400046295	Potato	cytosol	52.95	45.92
KRH72794	Soybean	plasma membrane	52.39	45.88
TraesCS3D01G382500.1	Wheat	cytosol	28.23	45.48
TraesCS3B01G422200.1	Wheat	cytosol	28.23	45.48
TraesCS3A01G390200.1	Wheat	cytosol	27.95	45.33
KRG98177	Soybean	cytosol	53.51	45.3
HORVU3Hr1G081380.1	Barley	cytosol	28.09	45.25
KRH30135	Soybean	cytosol	53.23	45.23
CDX78262	Canola	cytosol	40.03	40.6
Os08t0110500-01	Rice	plasma membrane	46.91	40.53
CDX73449	Canola	cytosol	40.03	40.48
TraesCS3A01G521300.1	Wheat	cytosol	47.05	40.31
TraesCS3D01G527900.1	Wheat	cytosol	46.91	40.19
CDY38931	Canola	cytosol	34.69	40.16
TraesCS3B01G591000.1	Wheat	cytosol	46.77	40.07
HORVU3Hr1G113910.3	Barley	cytosol	46.77	39.74
CDX74298	Canola	plastid	19.38	38.98
CDY02891	Canola	cytosol	40.17	38.81
CDY32692	Canola	peroxisome	19.1	38.53
EES01872	Sorghum	cytosol	43.54	38.51
CDY64696	Canola	cytosol, extracellular, mitochondrion, plastid	39.75	38.35
CDX91947	Canola	plastid	18.96	38.24
Zm00001d035040_P007	Maize	mitochondrion	46.63	38.07
Os01t0884400-01	Rice	plasma membrane	44.66	37.95
CDY02828	Canola	cytosol	18.82	37.85
TraesCS3B01G443500.1	Wheat	cytosol	27.53	37.05
TraesCS3A01G410100.1	Wheat	cytosol	27.39	36.86
CDY46092	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	53.23	36.69
PGSC0003DMT400027406	Potato	cytosol	13.62	36.33
Zm00001d049708_P007	Maize	cytosol	44.8	36.17
CDX90518	Canola	plastid	21.91	34.29
CDY09688	Canola	cytosol	21.63	33.92
CDX78273	Canola	cytosol	29.92	33.6
Zm00001d042608_P002	Maize	cytosol	43.4	33.41
CDY25764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	27.39	33.16
EES14396	Sorghum	cytosol	46.77	33.07
TraesCS3A01G410000.1	Wheat	cytosol	29.35	32.97
CDY12497	Canola	cytosol	27.53	32.83
CDX99112	Canola	cytosol	30.06	32.67
CDY21412	Canola	cytosol, endoplasmic reticulum	27.81	32.57
CDX68379	Canola	cytosol	30.06	32.52
CDY04746	Canola	cytosol, endoplasmic reticulum	27.81	32.51
CDX86080	Canola	cytosol	29.92	32.47
CDX68380	Canola	cytosol	24.16	32.33
CDY71737	Canola	cytosol	20.79	32.03
CDY28059	Canola	cytosol	20.65	31.82
CDX96295	Canola	cytosol, plasma membrane	27.39	31.66
CDX74050	Canola	cytosol	20.08	31.36
CDX72769	Canola	cytosol	26.83	31.21
CDY31736	Canola	cytosol	28.09	31.15
CDY08002	Canola	cytosol	19.66	30.77
CDX95193	Canola	cytosol	27.95	30.38
CDX77213	Canola	cytosol	27.39	30.33
CDY68037	Canola	cytosol	27.81	30.23
CDY68352	Canola	cytosol	18.4	28.73
CDY04747	Canola	cytosol, golgi	17.56	28.34
CDY38506	Canola	cytosol	17.84	27.85
CDY43686	Canola	plastid	25.0	26.93
CDY37666	Canola	cytosol, plastid	24.86	26.78
CDX99816	Canola	plastid	27.11	26.66
CDY43332	Canola	mitochondrion	26.83	26.56
CDX90186	Canola	mitochondrion	26.54	26.51
CDY48332	Canola	mitochondrion, plastid	25.98	26.28
CDX71307	Canola	cytosol	23.88	25.26
CDY31406	Canola	cytosol	23.88	25.22
CDX94661	Canola	plastid	25.14	25.18
CDX73439	Canola	plastid	29.78	23.53
CDX70810	Canola	cytosol	15.17	22.88
CDY51235	Canola	extracellular, golgi	15.45	21.19
CDY24520	Canola	cytosol	18.96	20.03
CDY54132	Canola	cytosol	19.1	20.0
CDY55050	Canola	cytosol	19.52	19.97
CDX93411	Canola	mitochondrion	19.38	19.77
CDY04344	Canola	cytosol	7.3	16.3
CDY04342	Canola	cytosol	7.16	15.32
CDX70805	Canola	cytosol	15.87	7.33
CDY51234	Canola	cytosol	16.15	6.94

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	GO:A0A078FZP2	UniProt:A0A078FZP2	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	EnsemblPlants:CDY18649	ProteinID:CDY18649	ProteinID:CDY18649.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00005713001
InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514	PFAM:PF04564
PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF7	SMART:SM00185	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EECCDA	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

BnaA09g07460DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078FZP2]

Coordinates

chrLK032087:+:298797..301539

Molecular Weight (calculated)

77933.4 Da

IEP (calculated)

5.308

GRAVY (calculated)

-0.141

Length

712 amino acids

Sequence
(BLAST)

001: MEVSWLRVLL DNISSYLSIS SMDTLYSNPA HKYYTRGEDI AKLLQPVLEN LVGSDASPSE LLNNGFEELS QYIDELREQF QSWEPLSSRI FYVLQIESLA
101: TKLRESSLEV FQLLKHCEQH LPADLVSPSF EDCIELVKLV GRDEVSCTID LALIDQREGN GPTSEVLVKI AESVGLRSNQ EILIEGVVLA SLKENAELTE
201: NNTEAEFIEG LISLITRMHD HLTNIKQSQL GCSVPVPPDF RCPLSLELMT DPVIVTSGQT YERAFIEKWF DMGLMVCPKT RQPLSQTSLT PNFIVKAFIS
301: NWCESNNVNL PDPLELVQSS QPFPLLSERG SSSSPMKIGG NGRTESLDAT KCKKLRQVLS RSVSAPEIVF ELDSKTERNT PPPAPAVTSV SQARVETVRR
401: LPSARHFHHP GIIPATIRET GSSSSIESEV KKLIEDLKSS SLEAQGEATA RIRILSRNST DNRIVIARCG AIDSLVNLLY STDERIQADA VTCLLNLSIN
501: DNNKSVIADS GAIEPLIHVL RTGNLEAKEN SAATLFSLSV IEENKTKIGE AGAIEPLVEL LGNGSLRGKK DAATALFNLS IHHENKAKVI EAGAVRYLVE
601: LMDPAAGMVE KAVVVLANLA TVKEGKVAIG EEGGIPVLVE VVELGSARGK ENATAALLQL SMHSQRFCNS IIREGAIPPL VALTKSGTAR AKEKAHNLLK
701: YFKSQKQGQR RG

Best Arabidopsis Sequence Match ( AT5G67340.2 )
(BLAST)

001: MMVHMEVSWL RVLLDNISSY LSLSSMDDLS SNPAHKYYTR GEDIGKLIKP VLENLIDSDA APSELLNNGF EELAQYVDEL REQFQSWQPL STRIFYVLRI
101: ESLASKLRES SLEVFQLLKH CEQHLPADLI SPSFEECIEL VKLVARDEIS YTIDQALKDQ KKGVGPTSEV LVKIAESTGL RSNQEILVEG VVLTNMKEDA
201: ELTDNDTEAE YLDGLISLTT QMHEYLSDIK QAQLRCPVRV PSDFRCSLSL ELMTDPVIVA SGQTFERVFI QKWIDMGLMV CPKTRQALSH TTLTPNFIVR
301: AFLASWCETN NVYPPDPLEL IHSSEPFPLL VESVRASSSE NGHSESLDAE ELRQVFSRSA SAPGIVSEVV CKTKRNNNAA ADRSLTRSNT PWKFPEERHW
401: RHPGIIPATV RETGSSSSIE TEVKKLIDDL KSSSLDTQRE ATARIRILAR NSTDNRIVIA RCEAIPSLVS LLYSTDERIQ ADAVTCLLNL SINDNNKSLI
501: AESGAIVPLI HVLKTGYLEE AKANSAATLF SLSVIEEYKT EIGEAGAIEP LVDLLGSGSL SGKKDAATAL FNLSIHHENK TKVIEAGAVR YLVELMDPAF
601: GMVEKAVVVL ANLATVREGK IAIGEEGGIP VLVEVVELGS ARGKENATAA LLQLCTHSPK FCNNVIREGV IPPLVALTKS GTARGKEKAQ NLLKYFKAHR
701: QSNQRRG

Arabidopsis Description

PUB2U-box domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5XEZ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.