Factsheet for HORVU3Hr1G113910.3

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G527900.1	Wheat	cytosol	95.58	96.39
TraesCS3A01G521300.1	Wheat	cytosol	94.99	95.79
TraesCS3B01G591000.1	Wheat	cytosol	94.99	95.79
Os08t0110500-01	Rice	plasma membrane	83.77	85.19
HORVU3Hr1G081380.1	Barley	cytosol	44.27	83.94
Zm00001d035040_P007	Maize	mitochondrion	79.95	76.83
KRH17146	Soybean	cytosol	21.72	76.47
GSMUA_Achr9P12570_001	Banana	cytosol	26.49	74.0
Zm00001d049708_P007	Maize	cytosol	77.57	73.7
EES14396	Sorghum	cytosol	81.5	67.83
GSMUA_Achr4P01530_001	Banana	plasma membrane	47.61	65.3
CDX76873	Canola	cytosol, plastid	47.14	52.88
Solyc01g014230.2.1	Tomato	cytosol	49.88	51.54
VIT_07s0129g00590.t01	Wine grape	cytosol	52.15	51.53
KRH30135	Soybean	cytosol	51.43	51.43
PGSC0003DMT400046295	Potato	cytosol	50.24	51.28
KRG98177	Soybean	cytosol	51.43	51.25
AT2G23140.1	Thale cress	cytosol	49.28	49.82
Solyc12g100000.1.1	Tomato	cytosol, plastid	48.69	49.82
KRH72794	Soybean	plasma membrane	47.49	48.95
PGSC0003DMT400027406	Potato	cytosol	15.39	48.31
CDY18649	Canola	cytosol, plastid	39.74	46.77
CDX81323	Canola	cytosol, plastid	39.98	46.33
Bra037117.1-P	Field mustard	cytosol, plastid	40.21	45.91
AT5G67340.1	Thale cress	cytosol	38.19	45.26
Bra032180.1-P	Field mustard	cytosol	30.67	44.01
CDY38931	Canola	cytosol	31.98	43.58
Bra012155.1-P	Field mustard	cytosol	32.22	40.97
CDY57440	Canola	cytosol	32.22	40.97
HORVU7Hr1G038870.1	Barley	plastid	13.96	40.77
CDY12838	Canola	cytosol	33.77	40.49
CDY46092	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	47.26	38.33
HORVU2Hr1G036080.15	Barley	plastid	20.05	36.68
HORVU7Hr1G000780.1	Barley	cytosol	25.66	36.44
HORVU7Hr1G121810.1	Barley	cytosol	23.51	30.73
HORVU5Hr1G021270.1	Barley	cytosol	24.94	30.65
HORVU5Hr1G021280.1	Barley	cytosol	25.06	30.52
HORVU7Hr1G061800.2	Barley	cytosol	22.91	29.81
HORVU2Hr1G067610.6	Barley	cytosol	16.11	28.48
HORVU4Hr1G059610.2	Barley	cytosol	24.94	27.07
HORVU1Hr1G069990.1	Barley	plastid	19.93	24.49
HORVU6Hr1G073280.1	Barley	cytosol	22.91	23.91
HORVU3Hr1G081300.1	Barley	plastid	19.57	23.84
HORVU6Hr1G041430.8	Barley	mitochondrion	20.41	20.75
HORVU5Hr1G059280.1	Barley	cytosol, plasma membrane	16.95	20.26

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	EMBL:AK361754	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:HORVU3Hr1G113910	EnsemblPlants:HORVU3Hr1G113910.3	InterPro:IPR000225	InterPro:IPR003613
InterPro:IPR011989	InterPro:IPR013083	UniProt:M0YIE3	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF220	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniParc:UPI000296FCEE	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:M0YIE3]

Coordinates

chrchr3H:-:689574364..689578788

Molecular Weight (calculated)

90556.3 Da

IEP (calculated)

5.293

GRAVY (calculated)

-0.269

Length

838 amino acids

Sequence
(BLAST)

001: MDLFTGLMED FSPRALLNSI SHLSALTSDG STARPKPIQK YCQNVCDISS IVSPLIEDIC KSPEEQLDEV LRELDIAINE ASGLIGNWHQ TTSKIYFVWQ
101: IESVISDIQG CSLQLCQLAN SLLPSLTGCA CICIQKLQDI NYEHMFDLAK EVAKKLNGND TQSPENLSIV SSSLSLSTNL ELYMEAVSLE NLRTRAMRSE
201: NRKELELAEE MIPMVNYMHE QLLRETQLLN INGVPIPADF CCPLSLELMS DPVILASGQT YERVYIKLWL DEGFTICPKT RQRLAHSNLI PNYTVKALIS
301: NWCESHDIKL PDPVKSLKLN FPSAASSLQD LSTTGNSPLH PSAGRGNIPG SPEADLYMKS LNRASPSHNG VHQNSDALVN RPSHDASANQ SSDYPNGSTP
401: DISKLSLASS EARESTLEGR HAGSNVQTSE KSTEEAFQAS LSNGDSQDHV GSSSVNGSLP NSGQLDGECD NDNGMVRVPG DRTNYSSDAS GEVADGGPSV
501: SSAPQRENVM LPRLGDVRMR GQFVRRQPSD RGFPRILSSS SMDARGDLSA IENQVRKLID DLKSDSIEAQ RSATSEIRLL AKHNMENRIV IANCGAINLL
601: VGLLHSSDAK IQENAVTALL NLSINDNNKI AIASADAVDP LIHVLETGNP EAKENSAATL FSLSVIEENK VRIGRSGAVK PLVDLLGNGT PRGKKDAATA
701: LFNLSILHEN KGRIVQADAV RYLVELMDPA AGMVDKAVAV LANLATIPEG RTAIGQARGI PALVEVVELG SARGKENAAA ALLQLCTNSN RFCSIVLQEG
801: AVPPLVALSQ SGTPRAREKA QALLSYFRSQ RHGNSARR

Best Arabidopsis Sequence Match ( AT2G23140.4 )
(BLAST)

001: MEVLLRSISS FLNLSSSKHI DLDPFEKYYK RVEELLRVLK PIADVVVTSD FVFDEKLGKA FEELTQDVDQ SIDLFRSWQA FSSKVYFVLQ IESLLPKMRD
101: TIVDTFQFLM SSKNHLPDEL SPASLEQCLE KIKHLSYEEI SSVIDGALRD QRDGVGPSPE ILVKIGENTG LRSNQEILIE AVALERQKEM AEQSENNAEV
201: EFLDQLIVIV NRMHERLLLI KQTQTSSVAI LADFFCPLSL EVMTDPVIVS SGQTYEKAFI KRWIDLGLKV CPKTRQTLTH TTLIPNYTVK ALIANWCETN
301: DVKLPDPNKS TSLNELSPLL SCTDSIPSTG ADVSARKVSN KSHDWDASSS ETGKPSFSSR ATEREGASPS RPASALGASS PGISGNGYGL DARRGSLNDF
401: EDRSNDSREL RTDAPGRSSV SSTTRGSVEN GQTSENHHHR SPSATSTVSN EEFPRADANE NSEESAHATP YSSDASGEIR SGPLAATTSA ATRRDLSDFS
501: PKFMDRRTRG QFWRRPSERL GSRIVSAPSN ETRRDLSEVE TQVKKLVEEL KSSSLDTQRQ ATAELRLLAK HNMDNRIVIG NSGAIVLLVE LLYSTDSATQ
601: ENAVTALLNL SINDNNKKAI ADAGAIEPLI HVLENGSSEA KENSAATLFS LSVIEENKIK IGQSGAIGPL VDLLGNGTPR GKKDAATALF NLSIHQENKA
701: MIVQSGAVRY LIDLMDPAAG MVDKAVAVLA NLATIPEGRN AIGQEGGIPL LVEVVELGSA RGKENAAAAL LQLSTNSGRF CNMVLQEGAV PPLVALSQSG
801: TPRAREKAQA LLSYFRNQRH GNAGRG

Arabidopsis Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F4ILG6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.