Factsheet for HORVU4Hr1G059610.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G097700.1	Wheat	cytosol	89.64	96.78
TraesCS4D01G207700.2	Wheat	plastid	91.58	90.99
TraesCS4B01G206900.1	Wheat	plastid	89.9	90.6
Os03t0275900-01	Rice	cytosol	75.26	80.03
Zm00001d028623_P001	Maize	cytosol	73.06	77.69
OQU92820	Sorghum	cytosol	73.19	75.43
GSMUA_Achr10P...	Banana	cytosol	52.85	65.18
VIT_06s0004g04530.t01	Wine grape	cytosol	55.05	62.32
KRH29807	Soybean	cytosol	52.98	61.88
Solyc11g066040.1.1	Tomato	cytosol	52.85	61.54
KRH24807	Soybean	cytosol	52.72	61.48
GSMUA_Achr5P07140_001	Banana	cytosol	50.0	61.47
PGSC0003DMT400001049	Potato	cytosol	52.33	60.84
PGSC0003DMT400078166	Potato	cytosol	50.91	59.46
Solyc06g076040.2.1	Tomato	cytosol	50.65	59.15
GSMUA_Achr5P28670_001	Banana	cytosol	43.65	59.12
AT2G28830.1	Thale cress	endoplasmic reticulum	44.04	58.42
HORVU5Hr1G021270.1	Barley	cytosol	50.52	57.18
HORVU5Hr1G021280.1	Barley	cytosol	50.52	56.69
AT3G46510.1	Thale cress	cytosol	48.06	56.21
CDX77213	Canola	cytosol	46.76	56.14
Bra035665.1-P	Field mustard	cytosol	47.41	56.13
CDY31736	Canola	cytosol	46.63	56.07
Bra018212.1-P	Field mustard	cytosol	47.02	55.76
CDX86080	Canola	cytosol	47.28	55.64
CDX99112	Canola	cytosol	46.89	55.27
CDX68379	Canola	cytosol	47.02	55.17
Bra033820.1-P	Field mustard	cytosol	47.02	55.17
CDX68380	Canola	cytosol	37.05	53.76
HORVU7Hr1G000780.1	Barley	cytosol	39.51	51.69
GSMUA_Achr10P...	Banana	cytosol	55.18	49.31
KRG99865	Soybean	cytosol	37.05	46.35
HORVU7Hr1G061800.2	Barley	cytosol	33.55	40.22
HORVU7Hr1G121810.1	Barley	cytosol	32.25	38.85
HORVU7Hr1G038870.1	Barley	plastid	13.47	36.24
HORVU6Hr1G073280.1	Barley	cytosol	34.07	32.75
HORVU2Hr1G067610.6	Barley	cytosol	20.08	32.7
HORVU3Hr1G081380.1	Barley	cytosol	17.36	30.32
HORVU1Hr1G069990.1	Barley	plastid	26.04	29.47
HORVU2Hr1G036080.15	Barley	plastid	17.1	28.82
HORVU3Hr1G081300.1	Barley	plastid	25.13	28.2
HORVU6Hr1G041430.8	Barley	mitochondrion	26.68	25.0
HORVU3Hr1G113910.3	Barley	cytosol	27.07	24.94
HORVU5Hr1G059280.1	Barley	cytosol, plasma membrane	22.02	24.25

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	UniProt:A0A287P9Q3	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	EnsemblPlantsGene:HORVU4Hr1G059610	EnsemblPlants:HORVU4Hr1G059610.2	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315
PANTHER:PTHR23315:SF142	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000B461BC4
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A287P9Q3]

Coordinates

chrchr4H:+:497914359..497923545

Molecular Weight (calculated)

83249.1 Da

IEP (calculated)

5.580

GRAVY (calculated)

-0.298

Length

772 amino acids

Sequence
(BLAST)

001: RLPTRRSSSR KAGHHPQNPL PLHIASFTAA AAPARRCRWR KAEASTAAMD EEAKPNTSEE ASTKASAAAP AAAAVATAAE AATPPTPSGP ESPEGGKEEV
101: GDLVEKVAEL VDEIAVISDF RNSYRRQFCN LSRRIRLLAP MMEEVKEGPR PLPEASVAAL RQLRDALAGA RELLRLGSNG SKIFLVLERE KIMQTFQDIT
201: SRLEHALAGI SFDELGISDE VREQVELVHA QFKRAKERPD TSDDILFNDL ISAYNSSTND NVDPDIIQRL SEKLQLVTIS DLNQESLILH EMASGGDPGA
301: VVENMSMLLK KIKDFVQTQD PIGIPASTTN PSRDENLTSP VVPDDFRCPI SLDLMKDPVI VSTGQTYERG CIERWLEAGH DTCPKTQQKL PNKSLTPNYV
401: LRSLIAQWCE ANGVEPPKRP AQPNNTPATC TASEHSKVIE LLQKLSSQNL ADQRGAAGML RQLAKRSAEN RACIGEAGAI PILVSLLPTT DVSTQEHVVT
501: ALLNLSIYEE NKARIITSGA VPGIVHVLKR GSMEARENSA ATLFSLSLVD ENKVTIGASG AIPALVLLLG NGSQRGKKDA ATALFNLCIY QGNKGKAVRA
601: GLVPILLELL TETESGMVDE ALAILAILSS HPEGKAAISA AAAIPILVGV IRNGSSRNKE NAAAVLVHLC NGEQQQQHLA EAQEQGIVTL LEELAESGTD
701: RGKRKANQLL ERMNRFLKQQ SQAQGDVMAQ AHVQAQTLPQ APVQAQADTQ LEESLPPTSS HLLPDTDEVN DH

Best Arabidopsis Sequence Match ( AT3G46510.1 )
(BLAST)

001: MEEEKASAAQ SLIDVVNEIA AISDYRITVK KLCYNLARRL KLLVPMFEEI RESNEPISED TLKTLMNLKE AMCSAKDYLK FCSQGSKIYL VMEREQVTSK
101: LMEVSVKLEQ SLSQIPYEEL DISDEVREQV ELVLSQFRRA KGRVDVSDDE LYEDLQSLCN KSSDVDAYQP VLERVAKKLH LMEIPDLAQE SVALHEMVAS
201: SGGDVGENIE EMAMVLKMIK DFVQTEDDNG EEQKVGVNSR SNGQTSTAAS QKIPVIPDDF RCPISLEMMR DPVIVSSGQT YERTCIEKWI EGGHSTCPKT
301: QQALTSTTLT PNYVLRSLIA QWCEANDIEP PKPPSSLRPR KVSSFSSPAE ANKIEDLMWR LAYGNPEDQR SAAGEIRLLA KRNADNRVAI AEAGAIPLLV
401: GLLSTPDSRI QEHSVTALLN LSICENNKGA IVSAGAIPGI VQVLKKGSME ARENAAATLF SLSVIDENKV TIGALGAIPP LVVLLNEGTQ RGKKDAATAL
501: FNLCIYQGNK GKAIRAGVIP TLTRLLTEPG SGMVDEALAI LAILSSHPEG KAIIGSSDAV PSLVEFIRTG SPRNRENAAA VLVHLCSGDP QHLVEAQKLG
601: LMGPLIDLAG NGTDRGKRKA AQLLERISRL AEQQKETAVS QPEEEAEPTH PESTTEAADT

Arabidopsis Description

PUB13U-box domain-containing protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.