Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035665.1-P | Field mustard | cytosol | 99.07 | 97.55 |
| CDX77213 | Canola | cytosol | 96.11 | 95.96 |
| AT2G28830.1 | Thale cress | endoplasmic reticulum | 69.94 | 77.15 |
| Solyc11g066040.1.1 | Tomato | cytosol | 63.4 | 61.39 |
| PGSC0003DMT400001049 | Potato | cytosol | 62.77 | 60.69 |
| VIT_06s0004g04530.t01 | Wine grape | cytosol | 63.55 | 59.82 |
| CDX99112 | Canola | cytosol | 60.75 | 59.54 |
| CDX86080 | Canola | cytosol | 60.44 | 59.15 |
| Solyc06g076040.2.1 | Tomato | cytosol | 60.28 | 58.55 |
| PGSC0003DMT400078166 | Potato | cytosol | 60.12 | 58.4 |
| CDX68379 | Canola | cytosol | 59.81 | 58.36 |
| Os12t0570000-01 | Rice | cytosol | 45.48 | 56.48 |
| CDX68380 | Canola | cytosol | 46.57 | 56.2 |
| Zm00001d030732_P001 | Maize | cytosol | 54.67 | 52.78 |
| OQU79384 | Sorghum | cytosol | 54.67 | 52.7 |
| Zm00001d041548_P002 | Maize | cytosol | 54.36 | 51.93 |
| HORVU5Hr1G021270.1 | Barley | cytosol | 55.14 | 51.91 |
| TraesCS5A01G078400.1 | Wheat | cytosol | 55.3 | 51.9 |
| TraesCS5B01G087500.1 | Wheat | cytosol | 54.83 | 51.61 |
| GSMUA_Achr10P... | Banana | cytosol | 50.31 | 51.6 |
| TraesCS5D01G093700.1 | Wheat | cytosol | 54.83 | 51.46 |
| HORVU5Hr1G021280.1 | Barley | cytosol | 55.14 | 51.45 |
| TraesCS4A01G097700.1 | Wheat | cytosol | 55.76 | 50.07 |
| GSMUA_Achr5P28670_001 | Banana | cytosol | 44.24 | 49.82 |
| Zm00001d028623_P001 | Maize | cytosol | 55.45 | 49.04 |
| Os03t0275900-01 | Rice | cytosol | 54.98 | 48.62 |
| GSMUA_Achr5P07140_001 | Banana | cytosol | 47.51 | 48.57 |
| CDX78273 | Canola | cytosol | 47.35 | 47.95 |
| GSMUA_Achr6P34170_001 | Banana | cytosol | 49.07 | 47.44 |
| OQU92820 | Sorghum | cytosol | 54.83 | 47.0 |
| HORVU4Hr1G059610.2 | Barley | cytosol | 56.07 | 46.63 |
| TraesCS4B01G206900.1 | Wheat | plastid | 55.61 | 46.61 |
| TraesCS4D01G207700.2 | Wheat | plastid | 55.76 | 46.07 |
| CDY21412 | Canola | cytosol, endoplasmic reticulum | 39.88 | 42.11 |
| CDY04746 | Canola | cytosol, endoplasmic reticulum | 39.88 | 42.04 |
| CDY25764 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 38.32 | 41.84 |
| CDY12497 | Canola | cytosol | 38.32 | 41.21 |
| CDY28679 | Canola | cytosol | 16.82 | 41.06 |
| CDX96295 | Canola | cytosol, plasma membrane | 38.94 | 40.58 |
| CDX72769 | Canola | cytosol | 38.01 | 39.87 |
| GSMUA_Achr10P... | Banana | cytosol | 53.58 | 39.81 |
| CDY04747 | Canola | cytosol, golgi | 26.79 | 39.0 |
| CDX95193 | Canola | cytosol | 38.78 | 38.02 |
| CDY68037 | Canola | cytosol | 38.63 | 37.86 |
| CDY28059 | Canola | cytosol | 25.23 | 35.06 |
| CDY71737 | Canola | cytosol | 25.08 | 34.85 |
| CDX74050 | Canola | cytosol | 24.61 | 34.65 |
| CDY08002 | Canola | cytosol | 24.14 | 34.07 |
| CDX73439 | Canola | plastid | 47.35 | 33.74 |
| CDY02828 | Canola | cytosol | 18.38 | 33.33 |
| CDX91947 | Canola | plastid | 18.22 | 33.14 |
| CDY32692 | Canola | peroxisome | 18.22 | 33.14 |
| CDX74298 | Canola | plastid | 18.07 | 32.77 |
| CDY38506 | Canola | cytosol | 22.12 | 31.14 |
| CDY68352 | Canola | cytosol | 21.96 | 30.92 |
| CDX90186 | Canola | mitochondrion | 32.24 | 29.03 |
| CDX78262 | Canola | cytosol | 31.62 | 28.92 |
| CDX94661 | Canola | plastid | 31.93 | 28.83 |
| CDY43332 | Canola | mitochondrion | 31.93 | 28.51 |
| CDY02891 | Canola | cytosol | 32.71 | 28.49 |
| CDX73449 | Canola | cytosol | 31.15 | 28.41 |
| CDY64696 | Canola | cytosol, extracellular, mitochondrion, plastid | 32.55 | 28.32 |
| CDY37666 | Canola | cytosol, plastid | 28.97 | 28.14 |
| CDY18649 | Canola | cytosol, plastid | 31.15 | 28.09 |
| CDX81323 | Canola | cytosol, plastid | 31.62 | 28.08 |
| CDY43686 | Canola | plastid | 28.66 | 27.84 |
| CDX76873 | Canola | cytosol, plastid | 32.24 | 27.71 |
| CDY48332 | Canola | mitochondrion, plastid | 29.91 | 27.27 |
| CDX99816 | Canola | plastid | 30.37 | 26.93 |
| CDX90518 | Canola | plastid | 19.0 | 26.81 |
| CDY31406 | Canola | cytosol | 28.04 | 26.71 |
| CDX71307 | Canola | cytosol | 27.88 | 26.6 |
| CDY12838 | Canola | cytosol | 28.66 | 26.32 |
| CDY09688 | Canola | cytosol | 18.54 | 26.21 |
| CDY57440 | Canola | cytosol | 26.79 | 26.1 |
| CDX70810 | Canola | cytosol | 18.22 | 24.79 |
| CDY38931 | Canola | cytosol | 23.68 | 24.72 |
| CDY55050 | Canola | cytosol | 24.45 | 22.56 |
| CDY51235 | Canola | extracellular, golgi | 18.22 | 22.54 |
| CDX93411 | Canola | mitochondrion | 24.3 | 22.35 |
| CDY24520 | Canola | cytosol | 23.36 | 22.26 |
| CDY54132 | Canola | cytosol | 23.52 | 22.21 |
| CDY46092 | Canola | endoplasmic reticulum, golgi, plasma membrane, plastid | 32.24 | 20.04 |
| CDY04344 | Canola | cytosol | 8.72 | 17.55 |
| CDY04342 | Canola | cytosol | 9.03 | 17.42 |
| CDX70805 | Canola | cytosol | 19.16 | 7.98 |
| CDY51234 | Canola | cytosol | 19.31 | 7.48 |
Protein Annotations
| Gene3D:1.20.930.20 | Gene3D:1.25.10.10 | MapMan:19.2.2.1.5.2.1 | Gene3D:3.30.40.10 | GO:A0A078H1S7 | UniProt:A0A078H1S7 |
| InterPro:ARM-like | InterPro:ARM-type_fold | InterPro:Adaptor_Cbl_N_dom_sf | InterPro:Armadillo | EnsemblPlants:CDY31736 | ProteinID:CDY31736 |
| ProteinID:CDY31736.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0004871 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007166 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00050378001 |
| InterPro:IPR000225 | InterPro:IPR003613 | InterPro:IPR011989 | InterPro:IPR013083 | InterPro:IPR036537 | PFAM:PF00514 |
| PFAM:PF04564 | PFscan:PS50176 | PFscan:PS51698 | PANTHER:PTHR23315 | PANTHER:PTHR23315:SF235 | SMART:SM00185 |
| SMART:SM00504 | SUPFAM:SSF48371 | SUPFAM:SSF57850 | UniPathway:UPA00143 | UniParc:UPI0004EEFCC6 | InterPro:Ubox_domain |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
BnaA04g16720DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078H1S7]
Coordinates
chrLK032278:-:177941..180816
Molecular Weight (calculated)
70831.9 Da
IEP (calculated)
6.033
GRAVY (calculated)
-0.193
Length
642 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKTELAKIL IESVKEIASI SDHRPPMKTH CAHLSRRLKL LLPMLEEIRD CKNSLPEESM MKALLSLKES LLHAKDLLIY ISQLSKIYLV LERDQVMVRF
101: QKVTALLEQA LSEIPYQSLE ISDELQEQVE LVLVQLRRSI GKGRGEKYDD ELYKDLLSLY DGATDSEILR RVAEKLQLMT VTDLTEESLA LLDMLSTSGG
201: DDPGESFEKM MMLLKNIKDF VQTYNPNLED VPLRSKPSLS KAQDEDQKNV PEDFRCPISH KLMSDPVIVS SGQTYDRECI KKWLDDGNST CPKTQVKLTI
301: DIVTPNYALR SLIAQWCESN GIEPPKPSSS SSSSSFSPPS DEQLKIEALL CKLTSQRPEE QRSAAGEIRL LAKQNNHNRV VLAASGAIPL LVSLLMNSDD
401: PRTQEHAVTS ILNLSIFQEN KGRIISTFGA VPGIVHVLKK GSMEARENAA ATLFSLSVID ENKMTIGAAG AIPPLVNLLS EGSHRGKKDA GTALFNLCIF
501: QGNKGKAVRA GLVPVLMRLL TEPEGRMVDE ALAILAILSS HPEGKVVVGA ADAVPFMVDF IRSGSPRNKE NAAAVLVQLC SWDPQHLIEA EKLGVMGCLI
601: DMAENGTDRG KRKAAQLLNR FSRFNEQQKQ SGLGVEGQVS LI
101: QKVTALLEQA LSEIPYQSLE ISDELQEQVE LVLVQLRRSI GKGRGEKYDD ELYKDLLSLY DGATDSEILR RVAEKLQLMT VTDLTEESLA LLDMLSTSGG
201: DDPGESFEKM MMLLKNIKDF VQTYNPNLED VPLRSKPSLS KAQDEDQKNV PEDFRCPISH KLMSDPVIVS SGQTYDRECI KKWLDDGNST CPKTQVKLTI
301: DIVTPNYALR SLIAQWCESN GIEPPKPSSS SSSSSFSPPS DEQLKIEALL CKLTSQRPEE QRSAAGEIRL LAKQNNHNRV VLAASGAIPL LVSLLMNSDD
401: PRTQEHAVTS ILNLSIFQEN KGRIISTFGA VPGIVHVLKK GSMEARENAA ATLFSLSVID ENKMTIGAAG AIPPLVNLLS EGSHRGKKDA GTALFNLCIF
501: QGNKGKAVRA GLVPVLMRLL TEPEGRMVDE ALAILAILSS HPEGKVVVGA ADAVPFMVDF IRSGSPRNKE NAAAVLVQLC SWDPQHLIEA EKLGVMGCLI
601: DMAENGTDRG KRKAAQLLNR FSRFNEQQKQ SGLGVEGQVS LI
001: MLRICFLSLA MLAKFTWCVL ERDQVMVKFQ KVTSLLEQAL SIIPYENLEI SDELKEQVEL VLVQLRRSLG KRGGDVYDDE LYKDVLSLYS GRGSVMESDM
101: VRRVAEKLQL MTITDLTQES LALLDMVSSS GGDDPGESFE KMSMVLKKIK DFVQTYNPNL DDAPLRLKSS LPKSRDDDRD MLIPPEEFRC PISLELMTDP
201: VIVSSGQTYE RECIKKWLEG GHLTCPKTQE TLTSDIMTPN YVLRSLIAQW CESNGIEPPK RPNISQPSSK ASSSSSAPDD EHNKIEELLL KLTSQQPEDR
301: RSAAGEIRLL AKQNNHNRVA IAASGAIPLL VNLLTISNDS RTQEHAVTSI LNLSICQENK GKIVYSSGAV PGIVHVLQKG SMEARENAAA TLFSLSVIDE
401: NKVTIGAAGA IPPLVTLLSE GSQRGKKDAA TALFNLCIFQ GNKGKAVRAG LVPVLMRLLT EPESGMVDES LSILAILSSH PDGKSEVGAA DAVPVLVDFI
501: RSGSPRNKEN SAAVLVHLCS WNQQHLIEAQ KLGIMDLLIE MAENGTDRGK RKAAQLLNRF SRFNDQQKQH SGLGLEDQIS LI
101: VRRVAEKLQL MTITDLTQES LALLDMVSSS GGDDPGESFE KMSMVLKKIK DFVQTYNPNL DDAPLRLKSS LPKSRDDDRD MLIPPEEFRC PISLELMTDP
201: VIVSSGQTYE RECIKKWLEG GHLTCPKTQE TLTSDIMTPN YVLRSLIAQW CESNGIEPPK RPNISQPSSK ASSSSSAPDD EHNKIEELLL KLTSQQPEDR
301: RSAAGEIRLL AKQNNHNRVA IAASGAIPLL VNLLTISNDS RTQEHAVTSI LNLSICQENK GKIVYSSGAV PGIVHVLQKG SMEARENAAA TLFSLSVIDE
401: NKVTIGAAGA IPPLVTLLSE GSQRGKKDAA TALFNLCIFQ GNKGKAVRAG LVPVLMRLLT EPESGMVDES LSILAILSSH PDGKSEVGAA DAVPVLVDFI
501: RSGSPRNKEN SAAVLVHLCS WNQQHLIEAQ KLGIMDLLIE MAENGTDRGK RKAAQLLNRF SRFNDQQKQH SGLGLEDQIS LI
Arabidopsis Description
PUB12PLANT U-BOX 12 [Source:TAIR;Acc:AT2G28830]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.