Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY71737 | Canola | cytosol | 98.05 | 98.05 |
| CDX74050 | Canola | cytosol | 89.61 | 90.79 |
| CDY08002 | Canola | cytosol | 88.53 | 89.89 |
| AT3G07360.1 | Thale cress | cytosol | 88.74 | 89.13 |
| VIT_00s0524g00030.t01 | Wine grape | cytosol | 59.74 | 61.47 |
| PGSC0003DMT400016998 | Potato | cytosol | 59.09 | 60.8 |
| Solyc09g056450.2.1 | Tomato | cytosol | 58.44 | 60.13 |
| KRH46608 | Soybean | cytosol | 58.44 | 58.57 |
| KRG99581 | Soybean | cytosol | 57.58 | 57.7 |
| VIT_04s0043g00840.t01 | Wine grape | cytosol | 55.63 | 56.48 |
| KRH68828 | Soybean | cytosol | 51.73 | 55.58 |
| KRG97080 | Soybean | cytosol, nucleus | 51.3 | 53.86 |
| GSMUA_Achr6P06560_001 | Banana | cytosol | 43.07 | 53.35 |
| GSMUA_Achr10P... | Banana | cytosol | 40.48 | 50.0 |
| GSMUA_Achr9P01670_001 | Banana | cytosol | 50.22 | 49.79 |
| PGSC0003DMT400011486 | Potato | cytosol | 37.23 | 48.18 |
| KRG92593 | Soybean | cytosol | 46.1 | 48.08 |
| Os02t0488600-01 | Rice | cytosol, nucleus | 43.51 | 47.52 |
| Solyc04g050780.1.1 | Tomato | cytosol | 43.07 | 46.17 |
| PGSC0003DMT400039084 | Potato | cytosol | 43.07 | 44.92 |
| Zm00001d016501_P001 | Maize | cytosol | 44.81 | 44.52 |
| Solyc04g050770.1.1 | Tomato | cytosol | 42.64 | 44.47 |
| EES06804 | Sorghum | cytosol | 44.59 | 44.4 |
| Os04t0348400-01 | Rice | cytosol | 43.51 | 43.79 |
| TraesCS2D01G275400.1 | Wheat | nucleus | 43.51 | 43.7 |
| TraesCS2B01G294100.1 | Wheat | nucleus | 43.51 | 43.7 |
| TraesCS2A01G276400.1 | Wheat | nucleus | 43.51 | 43.7 |
| HORVU2Hr1G067610.6 | Barley | cytosol | 43.72 | 42.62 |
| CDY68352 | Canola | cytosol | 38.53 | 39.04 |
| CDY38506 | Canola | cytosol | 38.1 | 38.6 |
| CDY28679 | Canola | cytosol | 18.83 | 33.08 |
| CDX70810 | Canola | cytosol | 31.39 | 30.72 |
| CDX74298 | Canola | plastid | 21.21 | 27.68 |
| CDY25764 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 35.06 | 27.55 |
| CDX91947 | Canola | plastid | 21.0 | 27.48 |
| CDY32692 | Canola | peroxisome | 21.0 | 27.48 |
| CDY51235 | Canola | extracellular, golgi | 30.3 | 26.98 |
| CDY12497 | Canola | cytosol | 34.85 | 26.97 |
| CDY21412 | Canola | cytosol, endoplasmic reticulum | 35.06 | 26.64 |
| CDY04746 | Canola | cytosol, endoplasmic reticulum | 35.06 | 26.6 |
| CDX96295 | Canola | cytosol, plasma membrane | 35.06 | 26.3 |
| CDY02828 | Canola | cytosol | 20.13 | 26.27 |
| CDX72769 | Canola | cytosol | 34.2 | 25.82 |
| CDX78273 | Canola | cytosol | 35.28 | 25.71 |
| CDY31736 | Canola | cytosol | 35.06 | 25.23 |
| CDX77213 | Canola | cytosol | 34.63 | 24.88 |
| CDX68379 | Canola | cytosol | 33.77 | 23.71 |
| CDX99112 | Canola | cytosol | 33.55 | 23.66 |
| CDX86080 | Canola | cytosol | 33.55 | 23.63 |
| CDY04747 | Canola | cytosol, golgi | 21.86 | 22.9 |
| CDY68037 | Canola | cytosol | 32.25 | 22.75 |
| CDX68380 | Canola | cytosol | 26.19 | 22.74 |
| CDX95193 | Canola | cytosol | 32.03 | 22.6 |
| CDY18649 | Canola | cytosol, plastid | 31.82 | 20.65 |
| CDX78262 | Canola | cytosol | 31.17 | 20.51 |
| CDX73449 | Canola | cytosol | 30.95 | 20.31 |
| CDY09688 | Canola | cytosol | 19.91 | 20.26 |
| CDX81323 | Canola | cytosol, plastid | 31.39 | 20.06 |
| CDX90518 | Canola | plastid | 19.7 | 20.0 |
| CDX76873 | Canola | cytosol, plastid | 31.82 | 19.68 |
| CDY64696 | Canola | cytosol, extracellular, mitochondrion, plastid | 30.95 | 19.38 |
| CDY02891 | Canola | cytosol | 30.74 | 19.27 |
| CDY48332 | Canola | mitochondrion, plastid | 28.79 | 18.89 |
| CDX90186 | Canola | mitochondrion | 29.0 | 18.79 |
| CDX94661 | Canola | plastid | 28.57 | 18.57 |
| CDY43332 | Canola | mitochondrion | 28.79 | 18.5 |
| CDX71307 | Canola | cytosol | 26.84 | 18.43 |
| CDY31406 | Canola | cytosol | 26.84 | 18.4 |
| CDX99816 | Canola | plastid | 28.79 | 18.37 |
| CDY57440 | Canola | cytosol | 26.19 | 18.36 |
| CDY12838 | Canola | cytosol | 27.71 | 18.31 |
| CDY37666 | Canola | cytosol, plastid | 25.76 | 18.0 |
| CDX73439 | Canola | plastid | 34.85 | 17.87 |
| CDY43686 | Canola | plastid | 25.54 | 17.85 |
| CDY38931 | Canola | cytosol | 22.73 | 17.07 |
| CDY55050 | Canola | cytosol | 24.68 | 16.38 |
| CDX93411 | Canola | mitochondrion | 24.68 | 16.33 |
| CDY54132 | Canola | cytosol | 23.59 | 16.03 |
| CDY24520 | Canola | cytosol | 23.38 | 16.02 |
| CDY46092 | Canola | endoplasmic reticulum, golgi, plasma membrane, plastid | 31.39 | 14.04 |
| CDY04344 | Canola | cytosol | 8.87 | 12.85 |
| CDY04342 | Canola | cytosol | 8.66 | 12.01 |
| CDX70805 | Canola | cytosol | 31.6 | 9.47 |
| CDY51234 | Canola | cytosol | 31.82 | 8.87 |
Protein Annotations
| MapMan:19.2.2.1.5.2.1 | Gene3D:3.30.40.10 | GO:A0A078GSC2 | UniProt:A0A078GSC2 | InterPro:ARM-type_fold | InterPro:Armadillo |
| EnsemblPlants:CDY28059 | ProteinID:CDY28059 | ProteinID:CDY28059.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00039000001 | InterPro:IPR000225 |
| InterPro:IPR003613 | InterPro:IPR013083 | PFAM:PF00514 | PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR23315 |
| PANTHER:PTHR23315:SF227 | SMART:SM00185 | SMART:SM00504 | SUPFAM:SSF48371 | SUPFAM:SSF57850 | UniPathway:UPA00143 |
| UniParc:UPI0004EEBAF6 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
BnaC05g44610DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078GSC2]
Coordinates
chrLK032213:-:416738..418845
Molecular Weight (calculated)
51270.9 Da
IEP (calculated)
8.326
GRAVY (calculated)
-0.301
Length
462 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKTDAFDSD PTAIAKAKEL KREMKKLLTN IEEEDGLSVQ TIDQLQEALS AFKQATMRKM AKSSSLEMLE TMSCPEEFRC PLSNELMRDP VVLASGQTYD
101: KLFIQKWLSS GNRTCPKTQQ VLPHTALTPN LLIRDMISKW CKTVGLETTT YQSSLVDEEK AVTRSDREIF NSLLCKLSSS NLQDQKSAAK ELRRLTKKGT
201: EFRALFGESS DNITRLVNPL LLHGSTLNQD EQLQEDVITT LLNVSIHDDG NKKLVCENAN VIPLLIDALR RGTVATRSNA AATVFTLSAL DSNKALIGKS
301: GILKPLIDLL EEGNPSAIKD AAAAIFTLCI AHENRSRAVK DGAVRVLGKK ISEGLNVDEL LAILAMLVTH WKAVEELGEL GGVTWLLRIT RESECKRNKE
401: NAIVILHTIC FSDRTKWKEI KEEESSHGTI TKLAREGTSR AQRKANGILD RLRKAMNLTH TA
101: KLFIQKWLSS GNRTCPKTQQ VLPHTALTPN LLIRDMISKW CKTVGLETTT YQSSLVDEEK AVTRSDREIF NSLLCKLSSS NLQDQKSAAK ELRRLTKKGT
201: EFRALFGESS DNITRLVNPL LLHGSTLNQD EQLQEDVITT LLNVSIHDDG NKKLVCENAN VIPLLIDALR RGTVATRSNA AATVFTLSAL DSNKALIGKS
301: GILKPLIDLL EEGNPSAIKD AAAAIFTLCI AHENRSRAVK DGAVRVLGKK ISEGLNVDEL LAILAMLVTH WKAVEELGEL GGVTWLLRIT RESECKRNKE
401: NAIVILHTIC FSDRTKWKEI KEEESSHGTI TKLAREGTSR AQRKANGILD RLRKAMNLTH TA
001: MAKTGVFDSD PTAIAKAKEL KREMKKLLIK IDDEDDLGVQ TIDQLQDALS ALREATMRKM AKSSSLEMLE TVSCPEEFRC PLSNELMRDP VVLASGQTYD
101: KLFIQKWLSS GNRTCPKTQQ VLPHTALTPN LLIREMISKW CKKNGLETKS QYHPNLVNED ETVTRSDREI FNSLLCKVSS SNLQDQKSAA KELRLLTRKG
201: TEFRALFGES PDEITRLVNP LLHGSNPDEK LQEDVVTTLL NISIHDDSNK KLVCENPNVI PLLIDALRRG TVATRSNAAA AIFTLSALDS NKVLIGKSGI
301: LKPLIDLLEE GNPLAIKDVA AAIFTLCIAH ENRSRAVRDG AVRVLGKKIS NGLYVDELLA ILAMLVTHWK AVEELGELGG VSWLLKITRE SECKRNKENA
401: IVILHTICFS DRTKWKEIKE EENAHGTITK LSREGTSRAQ RKANGILDRL RKAMNLTHTA
101: KLFIQKWLSS GNRTCPKTQQ VLPHTALTPN LLIREMISKW CKKNGLETKS QYHPNLVNED ETVTRSDREI FNSLLCKVSS SNLQDQKSAA KELRLLTRKG
201: TEFRALFGES PDEITRLVNP LLHGSNPDEK LQEDVVTTLL NISIHDDSNK KLVCENPNVI PLLIDALRRG TVATRSNAAA AIFTLSALDS NKVLIGKSGI
301: LKPLIDLLEE GNPLAIKDVA AAIFTLCIAH ENRSRAVRDG AVRVLGKKIS NGLYVDELLA ILAMLVTHWK AVEELGELGG VSWLLKITRE SECKRNKENA
401: IVILHTICFS DRTKWKEIKE EENAHGTITK LSREGTSRAQ RKANGILDRL RKAMNLTHTA
Arabidopsis Description
PUB9RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VJC7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.