Factsheet for TraesCS2D01G275400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G294100.1	Wheat	nucleus	98.48	98.48
TraesCS2A01G276400.1	Wheat	nucleus	98.26	98.26
HORVU2Hr1G067610.6	Barley	cytosol	95.22	92.41
Os04t0348400-01	Rice	cytosol	75.22	75.38
GSMUA_Achr6P06560_001	Banana	cytosol	45.43	56.03
GSMUA_Achr9P01670_001	Banana	cytosol	55.0	54.29
GSMUA_Achr10P...	Banana	cytosol	43.7	53.74
AT3G07360.1	Thale cress	cytosol	45.0	45.0
KRH68828	Soybean	cytosol	41.3	44.19
VIT_04s0043g00840.t01	Wine grape	cytosol	43.7	44.18
VIT_00s0524g00030.t01	Wine grape	cytosol	42.83	43.88
CDY28059	Canola	cytosol	43.7	43.51
CDY71737	Canola	cytosol	43.7	43.51
CDX74050	Canola	cytosol	43.04	43.42
KRG97080	Soybean	cytosol, nucleus	41.52	43.41
Bra001247.1-P	Field mustard	cytosol	42.83	43.2
Bra029642.1-P	Field mustard	cytosol	43.26	43.07
Bra040374.1-P	Field mustard	cytosol	41.96	42.79
KRG99581	Soybean	cytosol	42.83	42.73
KRH46608	Soybean	cytosol	42.83	42.73
CDY08002	Canola	cytosol	42.17	42.64
PGSC0003DMT400016998	Potato	cytosol	41.3	42.32
Solyc09g056450.2.1	Tomato	cytosol	40.87	41.87
PGSC0003DMT400011486	Potato	cytosol	30.87	39.78
Solyc04g050780.1.1	Tomato	cytosol	37.17	39.68
KRG92593	Soybean	cytosol	37.83	39.28
PGSC0003DMT400039084	Potato	cytosol	35.87	37.25
Solyc04g050770.1.1	Tomato	cytosol	35.87	37.25
CDY68352	Canola	cytosol	31.96	32.24
CDY38506	Canola	cytosol	31.74	32.02
AT5G18320.1	Thale cress	cytosol	31.09	31.22
AT5G18330.1	Thale cress	cytosol	27.61	28.54
AT5G18340.1	Thale cress	nucleus	28.26	28.51
Bra006451.1-P	Field mustard	cytosol	28.26	27.84
CDX70810	Canola	cytosol	27.83	27.12
CDY51235	Canola	extracellular, golgi	28.26	25.05
TraesCS7D01G001600.2	Wheat	cytosol, plastid	31.74	24.25
TraesCS2D01G194400.1	Wheat	cytosol	18.48	23.55
TraesCS6D01G274500.1	Wheat	cytosol	32.39	23.24
TraesCS7D01G289800.1	Wheat	cytosol	30.65	21.89
TraesCS5D01G093700.1	Wheat	cytosol	31.74	21.34
TraesCS7D01G536300.1	Wheat	cytosol	29.78	21.24
TraesCS3D01G382500.1	Wheat	cytosol	19.57	20.36
TraesCS1D01G299400.1	Wheat	cytosol, plastid	29.35	20.24
TraesCS4D01G207700.2	Wheat	plastid	33.91	20.08
TraesCS2D01G197200.1	Wheat	plastid	19.35	19.39
TraesCS3D01G339600.1	Wheat	plastid	27.61	18.43
TraesCS6D01G180400.1	Wheat	plastid	28.7	18.21
TraesCS3D01G527900.1	Wheat	cytosol	29.57	16.37
TraesCS5D01G204700.1	Wheat	cytosol, plasma membrane	21.96	14.41
TraesCS2D01G475600.1	Wheat	cytosol, plasma membrane	21.52	14.37
Bra002153.1-P	Field mustard	cytosol	32.17	10.83
CDX70805	Canola	cytosol	27.83	8.31
CDY51234	Canola	cytosol	28.48	7.91
Bra006452.1-P	Field mustard	cytosol	28.48	7.89

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514	PFAM:PF04564
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF121	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
EnsemblPlantsGene:TraesCS2D01G275400	EnsemblPlants:TraesCS2D01G275400.1	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	TIGR:cd16664	SEG:seg

Description

No Description!

Coordinates

chr2D:-:345076945..345079709

Molecular Weight (calculated)

50428.3 Da

IEP (calculated)

5.571

GRAVY (calculated)

-0.238

Length

460 amino acids

Sequence
(BLAST)

001: MAKPPPAEEE AAALRRRLRR LVATITAGGA GAEAFDEAAA ALAALREAQV GGSRKGAPGE ETRSANEAES VPAQFLCPIS SKIMRDPVVV ESGQTYDRRY
101: IAEWFSAGNQ MCPQTQQVLL NTTLVPNLLI RSLIAEWCTE NGFALSPLEN QEEDHTCNSE QRTFDEIFNK ITSSSNSTER KQAIKGLRLL TKRSSEFRAV
201: LEERPDSISQ MTFARFSNPG LQNDPQVVED MVTIILNFSL HDSNKKIIGD DPEAIPFLIW ALKSGDMGSR SNSAAAIFTL SALDSNKEKI GELGAIEPLI
301: DLLEHGSIIA KKDAASAIFN LCMLHENRSI ATRGGIVDVA IRAIGDQSLV EEFLAILALL SSNYDMVELM IEFGGATCML QAMRESECKR SKENAAVVLF
401: SICMYNRAKL KEIETDENTN GSLASLAQNG TPRARRKAAA ILEMMKKTKN MHMHNRHSSC

Best Arabidopsis Sequence Match ( AT3G07360.1 )
(BLAST)

001: MAKTGVFDSD PTAIAKAKEL KREMKKLLIK IDDEDDLGVQ TIDQLQDALS ALREATMRKM AKSSSLEMLE TVSCPEEFRC PLSNELMRDP VVLASGQTYD
101: KLFIQKWLSS GNRTCPKTQQ VLPHTALTPN LLIREMISKW CKKNGLETKS QYHPNLVNED ETVTRSDREI FNSLLCKVSS SNLQDQKSAA KELRLLTRKG
201: TEFRALFGES PDEITRLVNP LLHGSNPDEK LQEDVVTTLL NISIHDDSNK KLVCENPNVI PLLIDALRRG TVATRSNAAA AIFTLSALDS NKVLIGKSGI
301: LKPLIDLLEE GNPLAIKDVA AAIFTLCIAH ENRSRAVRDG AVRVLGKKIS NGLYVDELLA ILAMLVTHWK AVEELGELGG VSWLLKITRE SECKRNKENA
401: IVILHTICFS DRTKWKEIKE EENAHGTITK LSREGTSRAQ RKANGILDRL RKAMNLTHTA

Arabidopsis Description

PUB9RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VJC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.