Factsheet for TraesCS2D01G475600.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane
Any Predictor:	cytosol, mitochondrion, secretory
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G475600.1	Wheat	cytosol, plasma membrane	96.66	96.38
TraesCS2B01G499300.1	Wheat	plasma membrane	96.08	96.08
OQU80426	Sorghum	endoplasmic reticulum, plasma membrane	70.39	67.93
Zm00001d050308_P001	Maize	mitochondrion, plasma membrane	68.21	67.72
Os08t0415600-00	Rice	cytosol	67.92	65.27
TraesCS5D01G204700.1	Wheat	cytosol, plasma membrane	61.25	60.2
GSMUA_Achr9P14560_001	Banana	cytosol	39.62	46.67
GSMUA_Achr3P06160_001	Banana	plastid	36.57	44.44
VIT_01s0026g00190.t01	Wine grape	cytosol	39.77	40.12
VIT_17s0000g08080.t01	Wine grape	cytosol, mitochondrion	39.04	39.62
PGSC0003DMT400082693	Potato	cytosol	13.93	39.34
KRH03317	Soybean	cytosol, plastid	37.88	38.61
KRH69547	Soybean	cytosol, plastid	39.77	38.43
PGSC0003DMT400062931	Potato	cytosol	37.16	37.54
PGSC0003DMT400095861	Potato	cytosol, plasma membrane	30.48	37.5
Solyc03g114160.1.1	Tomato	cytosol	36.57	36.95
Solyc05g005670.1.1	Tomato	cytosol, mitochondrion	35.85	36.06
KRH54418	Soybean	cytosol, plastid	35.41	35.72
CDY55050	Canola	cytosol	35.99	35.63
PGSC0003DMT400090858	Potato	cytosol, mitochondrion	23.51	35.6
Bra019924.1-P	Field mustard	mitochondrion	35.85	35.54
CDX93411	Canola	mitochondrion	35.7	35.24
AT1G60190.1	Thale cress	cytosol, plastid	34.54	34.69
AT1G10560.1	Thale cress	cytosol	34.83	34.43
CDY24520	Canola	cytosol	33.38	34.12
Bra031521.1-P	Field mustard	cytosol	33.38	33.97
CDY54132	Canola	cytosol	33.24	33.68
CDY04344	Canola	cytosol	15.38	33.23
CDY04342	Canola	cytosol	15.53	32.13
TraesCS7D01G001600.2	Wheat	cytosol, plastid	24.67	28.24
TraesCS1D01G299400.1	Wheat	cytosol, plastid	26.56	27.44
TraesCS3D01G339600.1	Wheat	plastid	27.0	27.0
TraesCS5D01G093700.1	Wheat	cytosol	26.56	26.75
TraesCS6D01G274500.1	Wheat	cytosol	24.09	25.9
TraesCS6D01G180400.1	Wheat	plastid	26.85	25.52
TraesCS7D01G536300.1	Wheat	cytosol	22.79	24.34
TraesCS2D01G194400.1	Wheat	cytosol	12.48	23.82
TraesCS7D01G289800.1	Wheat	cytosol	22.21	23.76
TraesCS4D01G207700.2	Wheat	plastid	25.83	22.91
TraesCS2D01G197200.1	Wheat	plastid	15.09	22.66
TraesCS2D01G275400.1	Wheat	nucleus	14.37	21.52
TraesCS3D01G382500.1	Wheat	cytosol	13.5	21.04
TraesCS3D01G527900.1	Wheat	cytosol	22.21	18.41

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF04564	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF229	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS2D01G475600	EnsemblPlants:TraesCS2D01G475600.1	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	TIGR:cd16664
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:578002881..578004950

Molecular Weight (calculated)

73098.7 Da

IEP (calculated)

7.798

GRAVY (calculated)

0.175

Length

689 amino acids

Sequence
(BLAST)

001: MPPHDRRAPP GRRMLALPTV CPCEAIAPGT LLASLVALVA EVARHDAAAL PVLRRGAGEA LRVTRVLLAF LEEVREAAAP LPDASVLGLS ELHVAMQKLR
101: FLLADCSRRG ARLWVLMNAD LVASELRFVL CSVATALDVL PADVVGASVD AGELARLLSQ QAWRAPVWPD EDDGRATRSV RSMLALFRGS ATPHAEDAMM
201: VLGRVGITSW CDCAEEAAFL EAELLDRLED GRENDNDLVL ISGLMAFLVY CRVVLFDTVD TKKADAAAPG PRPAASCAAW TSQEALQCPI SLELMTDPVT
301: VTTGQTYDRT SIKRWVKSGC RTCPVTGEKL RSAQFVPNVA ARGIVEQLLL ANGTPLHEQQ SSKHRSAVDK TASAFGPAAA GGVRLAVAFL IARLSRGTPE
401: EQKKAAFEVR KLAKRNVYHR ACLAEADAVP WLLHLVSSAD ASVQDNAIAS LLNLSKHADG RRALVEAGGL GLVVDAVNVA AKVEARQNAA AILFYLSPNS
501: EYCQEIGRIP EAIPTLVRLM RDGTYRGRKN ALVSLHGVLH GASSIGKAVT AGAVGVLASL LPGDREDLAN DAVALLARIG EQPAGATAVL ASSELVASLV
601: DFLGASASRS GKDHCVALLA SLCLHGGDKV VALMGKMAAL MPALYALIAD GSPLANKKAR WLINEIHRVY EQRQPLPVAP PAGDRVIRV

Best Arabidopsis Sequence Match ( AT1G10560.1 )
(BLAST)

001: MIHTKTGSGR RILTFPTVEP SESISIVTLL DSLIQLAGDI LTFKSKHFST NKQSFRETLR RIQNLLVVFE EIRIRIRNSR RYFHDSAAAS SLKEIHVGFQ
101: KLKFLLEDCT RDGARLCMMM NSDQVSDHLR VLTRSISTSL SAFPVASVDL TTEVNELIDL VVRQARKYGV QPETNDKRAV SSINRILALF VNRVVPDPDE
201: INRILDHVGI RKWGDCVKEI NFLGEEIDAE RLDEKKKKSS DQVELLSSLM GFICYCRCII LGRIERDDHH NHHEDGIKKD HDLIRGLKVE DLLCPISLEI
301: MTDPVVIETG HTYDRSSITK WFGSGNITCP ITGKILTSTE LVDNVSVRQV IRKHCKTNGI VLAGISRRRK SHDDVVPESL AAKGAGKLIA KFLTSELING
401: GEEMIYRAVR EIRVQTKTSS FNRSCLVKAG AVTPLLKLLS SVDIRIQENA MAGILNLSKH VTGKSKIAGE GLKILVEILN EGAKTETRLY SASALFYLSS
501: VEDYSRLIGE NPDAIPGLMN IVKGDDYGDS AKRSALLAVM GLLMQSDNHW RVLAAGAVPI LLDLLRSGEI SGGLTADCLA TLAKLAEYPD GTIGVIRRGG
601: LKLAVKILSS SEDSPVAVKQ HCVGLILNLC LNGGRDVVGV LVKNSLVMGS LYTVLSNGEY GGSKKASALI RMIHEFQERK TGSVEPNLQR GRFVHAW

Arabidopsis Description

PUB18U-box domain-containing protein 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIJ5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.