Factsheet for AT1G10560.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55050	Canola	cytosol	79.2	79.31
CDX93411	Canola	mitochondrion	78.62	78.51
Bra019924.1-P	Field mustard	mitochondrion	78.05	78.27
AT1G60190.1	Thale cress	cytosol, plastid	64.56	65.6
PGSC0003DMT400082693	Potato	cytosol	15.93	45.49
VIT_01s0026g00190.t01	Wine grape	cytosol	44.19	45.1
PGSC0003DMT400090858	Potato	cytosol, mitochondrion	28.12	43.08
KRH69547	Soybean	cytosol, plastid	43.33	42.36
PGSC0003DMT400095861	Potato	cytosol, plasma membrane	34.0	42.32
Solyc05g005670.1.1	Tomato	cytosol, mitochondrion	41.32	42.04
TraesCS2A01G475600.1	Wheat	cytosol, plasma membrane	35.44	35.75
Zm00001d050308_P001	Maize	mitochondrion, plasma membrane	35.58	35.73
Os09t0378700-00	Rice	plasma membrane, plastid	36.44	35.67
TraesCS5D01G204700.1	Wheat	cytosol, plasma membrane	35.15	34.95
HORVU5Hr1G059280.1	Barley	cytosol, plasma membrane	35.15	34.95
TraesCS2D01G475600.1	Wheat	cytosol, plasma membrane	34.43	34.83
Zm00001d020332_P001	Maize	cytosol	34.86	34.81
TraesCS5B01G197400.1	Wheat	cytosol, plasma membrane, plastid	35.01	34.81
TraesCS2B01G499300.1	Wheat	plasma membrane	34.29	34.69
KXG35540	Sorghum	plasma membrane	35.58	34.64
TraesCS5A01G198800.1	Wheat	cytosol, plasma membrane	34.72	34.52
OQU80426	Sorghum	endoplasmic reticulum, plasma membrane	34.43	33.61
GSMUA_Achr9P14560_001	Banana	cytosol	27.98	33.33
Os08t0415600-00	Rice	cytosol	32.42	31.52
GSMUA_Achr3P06160_001	Banana	plastid	25.54	31.39
AT1G23030.1	Thale cress	cytosol	21.81	24.84
AT3G46510.1	Thale cress	cytosol	23.24	24.55
AT1G29340.1	Thale cress	plastid	25.39	24.28
AT1G71020.1	Thale cress	cytosol	21.38	23.73
AT2G28830.1	Thale cress	endoplasmic reticulum	19.66	23.54
AT5G01830.1	Thale cress	plastid	22.67	23.44
AT3G54850.1	Thale cress	cytosol	21.09	23.26
AT5G58680.1	Thale cress	cytosol	11.91	23.25
AT3G07360.1	Thale cress	cytosol	15.06	22.83
AT3G01400.1	Thale cress	cytosol	11.62	22.82
AT5G42340.1	Thale cress	cytosol	20.66	21.82
AT5G18320.1	Thale cress	cytosol	13.92	21.18
AT5G18340.1	Thale cress	nucleus	12.77	19.52
AT5G67340.1	Thale cress	cytosol	19.66	19.38
AT3G54790.1	Thale cress	cytosol	20.52	18.82
AT5G18330.1	Thale cress	cytosol	11.76	18.43
AT4G16490.1	Thale cress	plastid	11.76	17.37
AT2G23140.1	Thale cress	cytosol	20.52	17.25

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	EntrezGene:837597	ProteinID:AAD39579.1	ProteinID:AEE28594.1
InterPro:ARM-like	InterPro:ARM-type_fold	ArrayExpress:AT1G10560	EnsemblPlantsGene:AT1G10560	RefSeq:AT1G10560	TAIR:AT1G10560
RefSeq:AT1G10560-TAIR-G	EnsemblPlants:AT1G10560.1	TAIR:AT1G10560.1	EMBL:AY075683	InterPro:Armadillo	Unigene:At.14982
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009738
GO:GO:0009787	GO:GO:0009791	GO:GO:0009987	GO:GO:0010029	GO:GO:0010119	GO:GO:0012505
GO:GO:0016020	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0061630	InterPro:IPR000225
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	RefSeq:NP_172526.1	PFAM:PF00514	PFAM:PF04564
PO:PO:0000056	PO:PO:0000293	PO:PO:0007103	PO:PO:0007611	PO:PO:0007616	PO:PO:0009005
PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009046	PO:PO:0009052
PO:PO:0025022	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF116	Symbol:PUB18
UniProt:Q9XIJ5	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI00000A4F60
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

PUB18U-box domain-containing protein 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIJ5]

Coordinates

chr1:+:3484399..3486965

Molecular Weight (calculated)

76999.7 Da

IEP (calculated)

8.883

GRAVY (calculated)

-0.068

Length

697 amino acids

Sequence
(BLAST)

001: MIHTKTGSGR RILTFPTVEP SESISIVTLL DSLIQLAGDI LTFKSKHFST NKQSFRETLR RIQNLLVVFE EIRIRIRNSR RYFHDSAAAS SLKEIHVGFQ
101: KLKFLLEDCT RDGARLCMMM NSDQVSDHLR VLTRSISTSL SAFPVASVDL TTEVNELIDL VVRQARKYGV QPETNDKRAV SSINRILALF VNRVVPDPDE
201: INRILDHVGI RKWGDCVKEI NFLGEEIDAE RLDEKKKKSS DQVELLSSLM GFICYCRCII LGRIERDDHH NHHEDGIKKD HDLIRGLKVE DLLCPISLEI
301: MTDPVVIETG HTYDRSSITK WFGSGNITCP ITGKILTSTE LVDNVSVRQV IRKHCKTNGI VLAGISRRRK SHDDVVPESL AAKGAGKLIA KFLTSELING
401: GEEMIYRAVR EIRVQTKTSS FNRSCLVKAG AVTPLLKLLS SVDIRIQENA MAGILNLSKH VTGKSKIAGE GLKILVEILN EGAKTETRLY SASALFYLSS
501: VEDYSRLIGE NPDAIPGLMN IVKGDDYGDS AKRSALLAVM GLLMQSDNHW RVLAAGAVPI LLDLLRSGEI SGGLTADCLA TLAKLAEYPD GTIGVIRRGG
601: LKLAVKILSS SEDSPVAVKQ HCVGLILNLC LNGGRDVVGV LVKNSLVMGS LYTVLSNGEY GGSKKASALI RMIHEFQERK TGSVEPNLQR GRFVHAW

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.