Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G01400.1 | Thale cress | cytosol | 78.99 | 79.44 |
| CDY02828 | Canola | cytosol | 77.59 | 78.25 |
| Bra020360.1-P | Field mustard | cytosol | 75.91 | 76.77 |
| KRH15451 | Soybean | cytosol | 57.98 | 76.38 |
| CDY32692 | Canola | peroxisome | 75.35 | 76.2 |
| Solyc12g088360.1.1 | Tomato | cytosol | 56.02 | 72.73 |
| KRH05594 | Soybean | cytosol | 70.59 | 71.59 |
| Solyc04g077850.2.1 | Tomato | cytosol | 70.59 | 70.79 |
| PGSC0003DMT400027542 | Potato | cytosol | 70.03 | 70.22 |
| PGSC0003DMT400030161 | Potato | cytosol | 68.91 | 68.72 |
| KRH52088 | Soybean | cytosol | 59.38 | 64.83 |
| VIT_18s0001g09130.t01 | Wine grape | cytosol | 66.95 | 61.6 |
| GSMUA_Achr4P03430_001 | Banana | cytosol | 44.26 | 58.74 |
| GSMUA_Achr3P18890_001 | Banana | cytosol | 56.86 | 56.55 |
| GSMUA_Achr6P07710_001 | Banana | cytosol | 54.9 | 54.9 |
| Os07t0587500-01 | Rice | cytosol | 54.06 | 53.31 |
| Zm00001d021978_P001 | Maize | cytosol | 53.78 | 53.04 |
| EER97464 | Sorghum | cytosol | 53.5 | 52.76 |
| GSMUA_Achr10P... | Banana | cytosol | 54.62 | 52.42 |
| TraesCS2D01G194400.1 | Wheat | cytosol | 52.66 | 52.08 |
| TraesCS2B01G213900.1 | Wheat | cytosol | 52.66 | 52.08 |
| Zm00001d006726_P001 | Maize | cytosol | 52.38 | 51.94 |
| TraesCS2A01G193000.1 | Wheat | cytosol | 52.1 | 51.52 |
| GSMUA_Achr4P14130_001 | Banana | cytosol | 45.66 | 46.97 |
| GSMUA_Achr4P10960_001 | Banana | endoplasmic reticulum | 52.66 | 46.31 |
| GSMUA_Achr7P26200_001 | Banana | extracellular, golgi | 50.7 | 43.72 |
| GSMUA_Achr5P16030_001 | Banana | cytosol | 53.5 | 40.55 |
| Os03t0435300-00 | Rice | cytosol | 40.06 | 35.75 |
| Zm00001d003967_P001 | Maize | plastid | 42.58 | 33.78 |
| AT4G16490.1 | Thale cress | plastid | 43.14 | 32.63 |
| AT1G23030.1 | Thale cress | cytosol | 36.13 | 21.08 |
| AT2G28830.1 | Thale cress | endoplasmic reticulum | 33.33 | 20.45 |
| AT1G71020.1 | Thale cress | cytosol | 35.57 | 20.22 |
| AT3G07360.1 | Thale cress | cytosol | 26.05 | 20.22 |
| AT3G54850.1 | Thale cress | cytosol | 33.61 | 18.99 |
| AT5G67340.1 | Thale cress | cytosol | 36.69 | 18.53 |
| AT3G54790.1 | Thale cress | cytosol | 38.38 | 18.03 |
| AT5G18320.1 | Thale cress | cytosol | 22.97 | 17.9 |
| AT3G46510.1 | Thale cress | cytosol | 33.05 | 17.88 |
| AT2G23140.1 | Thale cress | cytosol | 41.46 | 17.85 |
| AT5G42340.1 | Thale cress | cytosol | 31.93 | 17.27 |
| AT5G18330.1 | Thale cress | cytosol | 20.17 | 16.18 |
| AT5G18340.1 | Thale cress | nucleus | 18.49 | 14.47 |
| AT1G29340.1 | Thale cress | plastid | 28.29 | 13.85 |
| AT1G10560.1 | Thale cress | cytosol | 23.25 | 11.91 |
| AT1G60190.1 | Thale cress | cytosol, plastid | 22.13 | 11.52 |
| AT5G01830.1 | Thale cress | plastid | 21.01 | 11.13 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:35.1 | EntrezGene:835982 | UniProt:A0A178UCI5 | ProteinID:AED97084.1 | InterPro:ARM-like |
| InterPro:ARM-type_fold | ArrayExpress:AT5G58680 | EnsemblPlantsGene:AT5G58680 | RefSeq:AT5G58680 | TAIR:AT5G58680 | RefSeq:AT5G58680-TAIR-G |
| EnsemblPlants:AT5G58680.1 | TAIR:AT5G58680.1 | EMBL:AY084344 | InterPro:Armadillo | EMBL:DQ447090 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | InterPro:IPR000225 | InterPro:IPR011989 | RefSeq:NP_200676.1 | ProteinID:OAO91399.1 | PFAM:PF00514 |
| PO:PO:0000036 | PO:PO:0000112 | PO:PO:0000293 | PO:PO:0003011 | PO:PO:0006016 | PO:PO:0006056 |
| PO:PO:0009005 | PO:PO:0009047 | PO:PO:0009049 | PO:PO:0009052 | PO:PO:0009081 | PFscan:PS50176 |
| PANTHER:PTHR23315 | PANTHER:PTHR23315:SF64 | UniProt:Q8LGC7 | SMART:SM00185 | SUPFAM:SSF48371 | UniParc:UPI000005EAC1 |
| SEG:seg | : | : | : | : | : |
Description
ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8LGC7]
Coordinates
chr5:-:23708112..23709527
Molecular Weight (calculated)
39040.7 Da
IEP (calculated)
4.950
GRAVY (calculated)
-0.190
Length
357 amino acids
Sequence
(BLAST)
(BLAST)
001: MANHNSFTYM DHSFSDISLN FDSSAFSDCN SDISCEFPTT TSESRQRKLF LSCAVDNSDD VIRNLITHLE SSSSIEEQKQ AAMEIRLLSK NKPENRIKLA
101: KAGAIKPLVS LISSSDLQLQ EYGVTAVLNL SLCDENKEMI VSSGAVKPLV NALRLGTPTT KENAACALLR LSQVEENKIT IGRSGAIPLL VNLLENGGFR
201: AKKDASTALY SLCSTNENKT RAVESGIMKP LVELMIDFES DMVDKSAFVM NLLMSAPESK PAVVEEGGVP VLVEIVEAGT QRQKEISVSI LLQLCEESVV
301: YRTMVAREGA VPPLVALSQG SASRGAKVKA EALIELLRQP RQQQQQQQHF ESNDNER
101: KAGAIKPLVS LISSSDLQLQ EYGVTAVLNL SLCDENKEMI VSSGAVKPLV NALRLGTPTT KENAACALLR LSQVEENKIT IGRSGAIPLL VNLLENGGFR
201: AKKDASTALY SLCSTNENKT RAVESGIMKP LVELMIDFES DMVDKSAFVM NLLMSAPESK PAVVEEGGVP VLVEIVEAGT QRQKEISVSI LLQLCEESVV
301: YRTMVAREGA VPPLVALSQG SASRGAKVKA EALIELLRQP RQQQQQQQHF ESNDNER
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.