Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G18320.1 | Thale cress | cytosol | 64.27 | 62.45 |
| CDY38506 | Canola | cytosol | 57.3 | 55.92 |
| AT5G18340.1 | Thale cress | nucleus | 56.63 | 55.26 |
| CDY68352 | Canola | cytosol | 55.28 | 53.95 |
| CDX70810 | Canola | cytosol | 49.44 | 46.61 |
| Bra006451.1-P | Field mustard | cytosol | 48.31 | 46.04 |
| CDY51235 | Canola | extracellular, golgi | 48.31 | 41.43 |
| VIT_00s0524g00030.t01 | Wine grape | cytosol | 34.38 | 34.08 |
| VIT_04s0043g00840.t01 | Wine grape | cytosol | 34.83 | 34.07 |
| GSMUA_Achr10P... | Banana | cytosol | 28.54 | 33.96 |
| AT3G07360.1 | Thale cress | cytosol | 34.83 | 33.7 |
| KRH68828 | Soybean | cytosol | 32.13 | 33.26 |
| PGSC0003DMT400011486 | Potato | cytosol | 26.52 | 33.05 |
| PGSC0003DMT400016998 | Potato | cytosol | 33.03 | 32.74 |
| Solyc09g056450.2.1 | Tomato | cytosol | 33.03 | 32.74 |
| KRG97080 | Soybean | cytosol, nucleus | 32.13 | 32.5 |
| GSMUA_Achr6P06560_001 | Banana | cytosol | 26.97 | 32.17 |
| KRG92593 | Soybean | cytosol | 31.69 | 31.83 |
| Solyc04g050780.1.1 | Tomato | cytosol | 30.79 | 31.79 |
| KRH46608 | Soybean | cytosol | 32.81 | 31.67 |
| KRG99581 | Soybean | cytosol | 32.58 | 31.45 |
| GSMUA_Achr9P01670_001 | Banana | cytosol | 32.36 | 30.9 |
| PGSC0003DMT400039084 | Potato | cytosol | 30.56 | 30.7 |
| Os02t0488600-01 | Rice | cytosol, nucleus | 28.76 | 30.26 |
| Solyc04g050770.1.1 | Tomato | cytosol | 29.44 | 29.57 |
| EES06804 | Sorghum | cytosol | 30.11 | 28.88 |
| Zm00001d016501_P001 | Maize | cytosol | 29.21 | 27.96 |
| TraesCS2A01G276400.1 | Wheat | nucleus | 28.76 | 27.83 |
| TraesCS2B01G294100.1 | Wheat | nucleus | 28.76 | 27.83 |
| TraesCS2D01G275400.1 | Wheat | nucleus | 28.54 | 27.61 |
| Os04t0348400-01 | Rice | cytosol | 28.31 | 27.45 |
| HORVU2Hr1G067610.6 | Barley | cytosol | 28.76 | 27.0 |
| AT3G01400.1 | Thale cress | cytosol | 16.4 | 20.56 |
| AT5G58680.1 | Thale cress | cytosol | 16.18 | 20.17 |
| AT3G54850.1 | Thale cress | cytosol | 27.64 | 19.46 |
| AT1G23030.1 | Thale cress | cytosol | 26.74 | 19.44 |
| AT2G28830.1 | Thale cress | endoplasmic reticulum | 24.49 | 18.73 |
| AT3G46510.1 | Thale cress | cytosol | 27.64 | 18.64 |
| Bra002153.1-P | Field mustard | cytosol | 56.85 | 18.52 |
| AT1G71020.1 | Thale cress | cytosol | 24.94 | 17.68 |
| AT5G42340.1 | Thale cress | cytosol | 25.62 | 17.27 |
| AT5G67340.1 | Thale cress | cytosol | 24.94 | 15.7 |
| AT3G54790.1 | Thale cress | cytosol | 25.17 | 14.74 |
| AT4G16490.1 | Thale cress | plastid | 15.51 | 14.62 |
| AT1G29340.1 | Thale cress | plastid | 23.6 | 14.4 |
| AT2G23140.1 | Thale cress | cytosol | 26.74 | 14.35 |
| CDX70805 | Canola | cytosol | 48.76 | 14.08 |
| AT5G01830.1 | Thale cress | plastid | 20.22 | 13.35 |
| Bra006452.1-P | Field mustard | cytosol | 49.66 | 13.31 |
| CDY51234 | Canola | cytosol | 49.44 | 13.28 |
| AT1G10560.1 | Thale cress | cytosol | 18.43 | 11.76 |
| AT1G60190.1 | Thale cress | cytosol, plastid | 16.63 | 10.79 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:831951 | EMBL:AC051626 | ProteinID:AED92540.1 |
| InterPro:ARM-like | InterPro:ARM-type_fold | ArrayExpress:AT5G18330 | EnsemblPlantsGene:AT5G18330 | RefSeq:AT5G18330 | TAIR:AT5G18330 |
| RefSeq:AT5G18330-TAIR-G | EnsemblPlants:AT5G18330.1 | TAIR:AT5G18330.1 | Unigene:At.54898 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR003613 | InterPro:IPR011989 | InterPro:IPR013083 |
| RefSeq:NP_197334.1 | PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF8 | UniProt:Q3E9F6 |
| SMART:SM00504 | SUPFAM:SSF48371 | SUPFAM:SSF57850 | UniParc:UPI00001624C3 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
PUB47Putative U-box domain-containing protein 47 [Source:UniProtKB/Swiss-Prot;Acc:Q3E9F6]
Coordinates
chr5:-:6068474..6070042
Molecular Weight (calculated)
50092.2 Da
IEP (calculated)
5.382
GRAVY (calculated)
-0.150
Length
445 amino acids
Sequence
(BLAST)
(BLAST)
001: MADSTADEST NADTLWRELH KVLPEIWYDG GGKDHCEIDE AIRILTCLRK IESKNPESDI SPVEVPKEFI CTLSNKIMIE PMLIASGQTF EKSYILEWLK
101: HERTCPRTKQ VLYHRFMIPN HLINEVIKEW CLIHNFDRPK TSDEVIDLFT GDLESLLQRI SSPSSVEDQT EAAKELALKA KRFSSVCVYF VAKIPDSITR
201: LLTPLSISED SNPEFLENIV TALHIFSTSE KNKTLVAENP LVLPLLAKYM KQGTVLTRIH SAATVNSLSY TDSNKIIIGN SEVLKALIHV IEEGDSLATS
301: EAFSALSNLC PVKEISEKAV SEGLIRAAIK KIKAGSNVSM LLSLLAFVST QNHQTTEEMD NLGLIYDLFS ILRNSNSLVN DENAVVIVYN ICKSYKALQN
401: VVLREEKRDV VLEEENKHGT FTRLENQEAG RATSLAKRIL EWILR
101: HERTCPRTKQ VLYHRFMIPN HLINEVIKEW CLIHNFDRPK TSDEVIDLFT GDLESLLQRI SSPSSVEDQT EAAKELALKA KRFSSVCVYF VAKIPDSITR
201: LLTPLSISED SNPEFLENIV TALHIFSTSE KNKTLVAENP LVLPLLAKYM KQGTVLTRIH SAATVNSLSY TDSNKIIIGN SEVLKALIHV IEEGDSLATS
301: EAFSALSNLC PVKEISEKAV SEGLIRAAIK KIKAGSNVSM LLSLLAFVST QNHQTTEEMD NLGLIYDLFS ILRNSNSLVN DENAVVIVYN ICKSYKALQN
401: VVLREEKRDV VLEEENKHGT FTRLENQEAG RATSLAKRIL EWILR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.