Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51235 | Canola | extracellular, golgi | 80.08 | 72.83 |
| AT5G18320.1 | Thale cress | cytosol | 55.3 | 56.99 |
| CDY38506 | Canola | cytosol | 53.81 | 55.7 |
| CDY68352 | Canola | cytosol | 53.6 | 55.48 |
| AT5G18340.1 | Thale cress | nucleus | 50.21 | 51.97 |
| AT5G18330.1 | Thale cress | cytosol | 46.61 | 49.44 |
| GSMUA_Achr6P06560_001 | Banana | cytosol | 27.12 | 34.32 |
| GSMUA_Achr10P... | Banana | cytosol | 26.91 | 33.96 |
| VIT_00s0524g00030.t01 | Wine grape | cytosol | 31.99 | 33.63 |
| PGSC0003DMT400011486 | Potato | cytosol | 25.42 | 33.61 |
| Solyc09g056450.2.1 | Tomato | cytosol | 31.78 | 33.41 |
| PGSC0003DMT400016998 | Potato | cytosol | 31.78 | 33.41 |
| VIT_04s0043g00840.t01 | Wine grape | cytosol | 31.57 | 32.75 |
| CDX74050 | Canola | cytosol | 31.36 | 32.46 |
| KRH68828 | Soybean | cytosol | 29.45 | 32.33 |
| CDY08002 | Canola | cytosol | 31.14 | 32.31 |
| CDY28059 | Canola | cytosol | 30.72 | 31.39 |
| PGSC0003DMT400039084 | Potato | cytosol | 29.45 | 31.38 |
| CDY71737 | Canola | cytosol | 30.51 | 31.17 |
| KRG97080 | Soybean | cytosol, nucleus | 28.81 | 30.91 |
| Solyc04g050770.1.1 | Tomato | cytosol | 28.81 | 30.7 |
| GSMUA_Achr9P01670_001 | Banana | cytosol | 30.3 | 30.69 |
| Solyc04g050780.1.1 | Tomato | cytosol | 27.97 | 30.63 |
| KRH46608 | Soybean | cytosol | 29.87 | 30.59 |
| KRG99581 | Soybean | cytosol | 29.87 | 30.59 |
| KRG92593 | Soybean | cytosol | 28.39 | 30.25 |
| Os02t0488600-01 | Rice | cytosol, nucleus | 26.91 | 30.02 |
| Zm00001d016501_P001 | Maize | cytosol | 28.18 | 28.6 |
| EES06804 | Sorghum | cytosol | 27.97 | 28.45 |
| Os04t0348400-01 | Rice | cytosol | 27.33 | 28.1 |
| TraesCS2A01G276400.1 | Wheat | nucleus | 27.12 | 27.83 |
| TraesCS2D01G275400.1 | Wheat | nucleus | 27.12 | 27.83 |
| TraesCS2B01G294100.1 | Wheat | nucleus | 27.12 | 27.83 |
| HORVU2Hr1G067610.6 | Barley | cytosol | 27.33 | 27.22 |
| CDX70805 | Canola | cytosol | 81.14 | 24.85 |
| CDY51234 | Canola | cytosol | 86.44 | 24.62 |
| CDY28679 | Canola | cytosol | 13.56 | 24.33 |
| CDX74298 | Canola | plastid | 15.25 | 20.34 |
| CDX91947 | Canola | plastid | 15.04 | 20.11 |
| CDX68380 | Canola | cytosol | 22.25 | 19.74 |
| CDY25764 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 24.36 | 19.56 |
| CDY32692 | Canola | peroxisome | 14.62 | 19.55 |
| CDY02828 | Canola | cytosol | 14.62 | 19.49 |
| CDX99112 | Canola | cytosol | 26.69 | 19.24 |
| CDY12497 | Canola | cytosol | 24.15 | 19.1 |
| CDX86080 | Canola | cytosol | 26.27 | 18.9 |
| CDX68379 | Canola | cytosol | 26.06 | 18.69 |
| CDY21412 | Canola | cytosol, endoplasmic reticulum | 23.73 | 18.42 |
| CDY04746 | Canola | cytosol, endoplasmic reticulum | 23.73 | 18.39 |
| CDX78273 | Canola | cytosol | 24.58 | 18.3 |
| CDY31736 | Canola | cytosol | 24.79 | 18.22 |
| CDX77213 | Canola | cytosol | 24.79 | 18.2 |
| CDY68037 | Canola | cytosol | 24.58 | 17.71 |
| CDX95193 | Canola | cytosol | 24.36 | 17.56 |
| CDX96295 | Canola | cytosol, plasma membrane | 22.67 | 17.37 |
| CDX72769 | Canola | cytosol | 22.46 | 17.32 |
| CDY04747 | Canola | cytosol, golgi | 15.68 | 16.78 |
| CDX78262 | Canola | cytosol | 23.09 | 15.53 |
| CDY57440 | Canola | cytosol | 21.4 | 15.33 |
| CDX73449 | Canola | cytosol | 22.67 | 15.2 |
| CDY18649 | Canola | cytosol, plastid | 22.88 | 15.17 |
| CDY12838 | Canola | cytosol | 22.03 | 14.88 |
| CDX81323 | Canola | cytosol, plastid | 22.67 | 14.8 |
| CDY02891 | Canola | cytosol | 22.88 | 14.65 |
| CDY64696 | Canola | cytosol, extracellular, mitochondrion, plastid | 22.88 | 14.63 |
| CDX90186 | Canola | mitochondrion | 22.03 | 14.59 |
| CDY09688 | Canola | cytosol | 13.98 | 14.54 |
| CDX90518 | Canola | plastid | 13.98 | 14.51 |
| CDY48332 | Canola | mitochondrion, plastid | 21.19 | 14.2 |
| CDY43332 | Canola | mitochondrion | 21.61 | 14.19 |
| CDX99816 | Canola | plastid | 21.61 | 14.09 |
| CDX94661 | Canola | plastid | 21.19 | 14.06 |
| CDY43686 | Canola | plastid | 19.49 | 13.92 |
| CDX71307 | Canola | cytosol | 19.7 | 13.82 |
| CDY31406 | Canola | cytosol | 19.7 | 13.8 |
| CDX76873 | Canola | cytosol, plastid | 21.82 | 13.79 |
| CDY37666 | Canola | cytosol, plastid | 19.28 | 13.77 |
| CDY38931 | Canola | cytosol | 17.37 | 13.33 |
| CDX73439 | Canola | plastid | 24.79 | 12.99 |
| CDX93411 | Canola | mitochondrion | 19.07 | 12.89 |
| CDY55050 | Canola | cytosol | 18.86 | 12.79 |
| CDY54132 | Canola | cytosol | 16.53 | 11.47 |
| CDY24520 | Canola | cytosol | 16.1 | 11.28 |
| CDY46092 | Canola | endoplasmic reticulum, golgi, plasma membrane, plastid | 22.25 | 10.16 |
| CDY04344 | Canola | cytosol | 5.08 | 7.52 |
| CDY04342 | Canola | cytosol | 4.87 | 6.91 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078C1M9 | InterPro:ARM-like | InterPro:ARM-type_fold |
| EnsemblPlants:CDX70810 | ProteinID:CDX70810 | ProteinID:CDX70810.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 |
| GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 |
| GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00140695001 | InterPro:IPR003613 | InterPro:IPR011989 | InterPro:IPR013083 |
| PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR23315 | PANTHER:PTHR23315:SF75 | SMART:SM00504 | SUPFAM:SSF48371 |
| SUPFAM:SSF57850 | UniPathway:UPA00143 | UniParc:UPI0004EDE968 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
BnaC03g08940D
Coordinates
chrLK031791:-:2155057..2157031
Molecular Weight (calculated)
52652.3 Da
IEP (calculated)
6.296
GRAVY (calculated)
-0.248
Length
472 amino acids
Sequence
(BLAST)
(BLAST)
001: MEESTAESTA ENADTLRMEL KKTMTEILGD GGVSEDRGEA DGSSRVLKAI DEAVRILNRL REVESKMAES ADTSSSSPAA SVLQVPKEFK CMLSRAIMSE
101: PVVIASGQTY EKRYIQQWLM YKQTCPKTKE VLSHRLWSPN HLVDELIAQW CQANKYDRPE ASDAPIGLFS DDIDLLLERI SSPSSFEDQT KAANELRRQT
201: KRFANVTAFF VAEIPDSITR LLTPLPALGE VIDTYPGLQK DIITALLYIS SLEENKTAVA QHPLVIPLLT KSLKKGTAKT RRNSAEALWL LSKLDSNKII
301: IGNSETLKAL VHVIKEDHFT AAISASYAVF HLCCLPENRG KVVSEGLIPA LINRIKERSY VYIYFALLAL MTAQNGVIEE IENLGFVDGM FSILRNTSCS
401: VTGENGTLIF LRMCGLNTGN RDRERTRLKL IKEEEEKYST FSKFAKQGSE RAVMEAKAIL QWIKRSGTGE EP
101: PVVIASGQTY EKRYIQQWLM YKQTCPKTKE VLSHRLWSPN HLVDELIAQW CQANKYDRPE ASDAPIGLFS DDIDLLLERI SSPSSFEDQT KAANELRRQT
201: KRFANVTAFF VAEIPDSITR LLTPLPALGE VIDTYPGLQK DIITALLYIS SLEENKTAVA QHPLVIPLLT KSLKKGTAKT RRNSAEALWL LSKLDSNKII
301: IGNSETLKAL VHVIKEDHFT AAISASYAVF HLCCLPENRG KVVSEGLIPA LINRIKERSY VYIYFALLAL MTAQNGVIEE IENLGFVDGM FSILRNTSCS
401: VTGENGTLIF LRMCGLNTGN RDRERTRLKL IKEEEEKYST FSKFAKQGSE RAVMEAKAIL QWIKRSGTGE EP
001: MADSTETNAD TLRRELQKVL TEILNDGGGN DRDETEAFSG VVKAIDEAVR ILTCLRKVES KIPESDISPV EVPKEFICTL SNTIMIEPVI IASGQTYEKR
101: YITEWLKHER TCPKTKQVLS HRLWIPNHLI SDLITQWCLV NKYDHQKPSD ELVAELFTSD IEALLQRVSS SSSVADQIEA AKELRHQTKK FPNVRVFFVA
201: GIHDSITRLL SPLSTLDEAV DSSLELQENI VTALFNLSIL ESNKTVIAEN CLVIPLLTKS LKQGTDETRR NAAATLSSLS AIDSNKIIIG NSEAVKALID
301: LIEEGDLLAT KEATSTVFNL CIVLENKGKV VSAGLIHAAT KKIKAGSNVD ELLSLLALIS THNRAVEEMD KLGFIYDLFS ILRKPSSLLT GENAVVIVFN
401: MYDRNRDRSR LKVVGEEENQ HGTFTKLAKQ GSVRAARKAQ GILQWIKRFV TGKEPQRA
101: YITEWLKHER TCPKTKQVLS HRLWIPNHLI SDLITQWCLV NKYDHQKPSD ELVAELFTSD IEALLQRVSS SSSVADQIEA AKELRHQTKK FPNVRVFFVA
201: GIHDSITRLL SPLSTLDEAV DSSLELQENI VTALFNLSIL ESNKTVIAEN CLVIPLLTKS LKQGTDETRR NAAATLSSLS AIDSNKIIIG NSEAVKALID
301: LIEEGDLLAT KEATSTVFNL CIVLENKGKV VSAGLIHAAT KKIKAGSNVD ELLSLLALIS THNRAVEEMD KLGFIYDLFS ILRKPSSLLT GENAVVIVFN
401: MYDRNRDRSR LKVVGEEENQ HGTFTKLAKQ GSVRAARKAQ GILQWIKRFV TGKEPQRA
Arabidopsis Description
PUB46Putative U-box domain-containing protein 46 [Source:UniProtKB/Swiss-Prot;Acc:Q3E9F7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.