Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68352 | Canola | cytosol | 91.45 | 91.45 |
| AT5G18320.1 | Thale cress | cytosol | 71.05 | 70.74 |
| AT5G18340.1 | Thale cress | nucleus | 59.43 | 59.43 |
| AT5G18330.1 | Thale cress | cytosol | 55.92 | 57.3 |
| CDX70810 | Canola | cytosol | 55.7 | 53.81 |
| CDY51235 | Canola | extracellular, golgi | 54.17 | 47.59 |
| KRH68828 | Soybean | cytosol | 37.28 | 39.53 |
| GSMUA_Achr6P06560_001 | Banana | cytosol | 32.24 | 39.41 |
| GSMUA_Achr10P... | Banana | cytosol | 32.02 | 39.04 |
| VIT_04s0043g00840.t01 | Wine grape | cytosol | 38.6 | 38.68 |
| KRH46608 | Soybean | cytosol | 39.04 | 38.61 |
| CDX74050 | Canola | cytosol | 38.6 | 38.6 |
| PGSC0003DMT400016998 | Potato | cytosol | 37.94 | 38.53 |
| KRG99581 | Soybean | cytosol | 38.82 | 38.39 |
| Solyc09g056450.2.1 | Tomato | cytosol | 37.72 | 38.31 |
| CDY28059 | Canola | cytosol | 38.6 | 38.1 |
| VIT_00s0524g00030.t01 | Wine grape | cytosol | 37.5 | 38.08 |
| CDY08002 | Canola | cytosol | 37.94 | 38.02 |
| KRG97080 | Soybean | cytosol, nucleus | 36.62 | 37.95 |
| CDY71737 | Canola | cytosol | 38.38 | 37.88 |
| KRG92593 | Soybean | cytosol | 36.18 | 37.25 |
| PGSC0003DMT400011486 | Potato | cytosol | 28.51 | 36.41 |
| GSMUA_Achr9P01670_001 | Banana | cytosol | 35.96 | 35.19 |
| Solyc04g050780.1.1 | Tomato | cytosol | 32.68 | 34.57 |
| Os02t0488600-01 | Rice | cytosol, nucleus | 31.14 | 33.57 |
| Solyc04g050770.1.1 | Tomato | cytosol | 31.8 | 32.73 |
| PGSC0003DMT400039084 | Potato | cytosol | 31.58 | 32.51 |
| TraesCS2B01G294100.1 | Wheat | nucleus | 32.24 | 31.96 |
| TraesCS2A01G276400.1 | Wheat | nucleus | 32.24 | 31.96 |
| Zm00001d016501_P001 | Maize | cytosol | 32.46 | 31.83 |
| TraesCS2D01G275400.1 | Wheat | nucleus | 32.02 | 31.74 |
| Os04t0348400-01 | Rice | cytosol | 31.8 | 31.59 |
| EES06804 | Sorghum | cytosol | 32.02 | 31.47 |
| HORVU2Hr1G067610.6 | Barley | cytosol | 32.24 | 31.01 |
| Bra002153.1-P | Field mustard | cytosol | 92.11 | 30.75 |
| CDY28679 | Canola | cytosol | 15.79 | 27.38 |
| CDY32692 | Canola | peroxisome | 18.42 | 23.8 |
| CDX74298 | Canola | plastid | 18.42 | 23.73 |
| CDY02828 | Canola | cytosol | 18.2 | 23.45 |
| CDX91947 | Canola | plastid | 17.98 | 23.23 |
| CDY25764 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 29.39 | 22.79 |
| CDX78273 | Canola | cytosol | 31.58 | 22.71 |
| CDY12497 | Canola | cytosol | 29.39 | 22.45 |
| CDY31736 | Canola | cytosol | 31.14 | 22.12 |
| CDX99112 | Canola | cytosol | 31.36 | 21.83 |
| CDX77213 | Canola | cytosol | 30.7 | 21.77 |
| CDX68379 | Canola | cytosol | 31.36 | 21.73 |
| CDX86080 | Canola | cytosol | 31.14 | 21.65 |
| CDX68380 | Canola | cytosol | 25.22 | 21.62 |
| CDY21412 | Canola | cytosol, endoplasmic reticulum | 28.73 | 21.55 |
| CDY04746 | Canola | cytosol, endoplasmic reticulum | 28.73 | 21.51 |
| CDX96295 | Canola | cytosol, plasma membrane | 28.73 | 21.27 |
| CDY68037 | Canola | cytosol | 29.39 | 20.46 |
| CDX72769 | Canola | cytosol | 27.41 | 20.42 |
| CDX95193 | Canola | cytosol | 29.17 | 20.31 |
| CDY04747 | Canola | cytosol, golgi | 19.08 | 19.73 |
| CDY09688 | Canola | cytosol | 19.08 | 19.16 |
| CDX90518 | Canola | plastid | 18.64 | 18.68 |
| CDY57440 | Canola | cytosol | 26.54 | 18.36 |
| CDY12838 | Canola | cytosol | 27.41 | 17.88 |
| CDY18649 | Canola | cytosol, plastid | 27.85 | 17.84 |
| CDX78262 | Canola | cytosol | 27.41 | 17.81 |
| CDX73449 | Canola | cytosol | 27.41 | 17.76 |
| CDX90186 | Canola | mitochondrion | 27.41 | 17.53 |
| CDY48332 | Canola | mitochondrion, plastid | 26.75 | 17.33 |
| CDX81323 | Canola | cytosol, plastid | 27.41 | 17.29 |
| CDY43332 | Canola | mitochondrion | 27.19 | 17.25 |
| CDY02891 | Canola | cytosol | 27.85 | 17.23 |
| CDY64696 | Canola | cytosol, extracellular, mitochondrion, plastid | 27.85 | 17.21 |
| CDX94661 | Canola | plastid | 26.54 | 17.02 |
| CDX76873 | Canola | cytosol, plastid | 27.63 | 16.87 |
| CDX99816 | Canola | plastid | 26.75 | 16.85 |
| CDY43686 | Canola | plastid | 24.34 | 16.79 |
| CDY37666 | Canola | cytosol, plastid | 24.34 | 16.79 |
| CDX71307 | Canola | cytosol | 24.78 | 16.79 |
| CDY31406 | Canola | cytosol | 24.78 | 16.77 |
| CDX70805 | Canola | cytosol | 55.7 | 16.48 |
| CDX73439 | Canola | plastid | 31.8 | 16.09 |
| CDY38931 | Canola | cytosol | 20.61 | 15.28 |
| CDY51234 | Canola | cytosol | 55.26 | 15.21 |
| CDY55050 | Canola | cytosol | 22.15 | 14.51 |
| CDX93411 | Canola | mitochondrion | 21.93 | 14.33 |
| CDY24520 | Canola | cytosol | 20.18 | 13.65 |
| CDY54132 | Canola | cytosol | 19.74 | 13.24 |
| CDY46092 | Canola | endoplasmic reticulum, golgi, plasma membrane, plastid | 27.85 | 12.29 |
| CDY04344 | Canola | cytosol | 5.48 | 7.84 |
| CDY04342 | Canola | cytosol | 5.26 | 7.21 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078HLJ7 | UniProt:A0A078HLJ7 | InterPro:ARM-like |
| InterPro:ARM-type_fold | EnsemblPlants:CDY38506 | ProteinID:CDY38506 | ProteinID:CDY38506.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00065961001 | InterPro:IPR003613 | InterPro:IPR011989 |
| InterPro:IPR013083 | PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR23315 | PANTHER:PTHR23315:SF75 | SMART:SM00504 |
| SUPFAM:SSF48371 | SUPFAM:SSF57850 | UniPathway:UPA00143 | UniParc:UPI0004EEAE01 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
BnaA10g16520DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078HLJ7]
Coordinates
chrLK032424:-:332753..334376
Molecular Weight (calculated)
50170.6 Da
IEP (calculated)
8.281
GRAVY (calculated)
-0.148
Length
456 amino acids
Sequence
(BLAST)
(BLAST)
001: MADSTTTAAD AVTLKREFKK ILSEILSYGG GSKDHGETGV LMKAIDEANR IINCLREVEP ETDILSPTPE KVDVPKEFKC TLSKKIMIEP VIIASGQTYE
101: KRYITAWLKR ERTCPISNQV LSHLSFTPNL LIDDLITQWC IVNKFERPKS SEDIVTELFT DGIDSLLQRI SSPSSVADQA QAAEELRRQT KRFANVRTFF
201: VSQLPDSITR LLTPLSAVDS SPELQENIIT TMFNLSIVEK NKTVIAETPL VIPLLTKSLK QGTAETRRNS AATLLSLSAI DSNRLIIGNS ETLKALIGLI
301: GEGGLFITEA ASAVFNICSV SENREKAVSS GLVPVLTTKI KEGSNVAELL SLLALVSTHN RGVKEMNDLG FINDLLSILR KPSCPVTHEN AVVIVFNMCD
401: RNRDRSGVLK VLSEEENQHG TFTKLAKQGS DRAVRKAEAI LKWLKRHGTG KAPQRG
101: KRYITAWLKR ERTCPISNQV LSHLSFTPNL LIDDLITQWC IVNKFERPKS SEDIVTELFT DGIDSLLQRI SSPSSVADQA QAAEELRRQT KRFANVRTFF
201: VSQLPDSITR LLTPLSAVDS SPELQENIIT TMFNLSIVEK NKTVIAETPL VIPLLTKSLK QGTAETRRNS AATLLSLSAI DSNRLIIGNS ETLKALIGLI
301: GEGGLFITEA ASAVFNICSV SENREKAVSS GLVPVLTTKI KEGSNVAELL SLLALVSTHN RGVKEMNDLG FINDLLSILR KPSCPVTHEN AVVIVFNMCD
401: RNRDRSGVLK VLSEEENQHG TFTKLAKQGS DRAVRKAEAI LKWLKRHGTG KAPQRG
001: MADSTETNAD TLRRELQKVL TEILNDGGGN DRDETEAFSG VVKAIDEAVR ILTCLRKVES KIPESDISPV EVPKEFICTL SNTIMIEPVI IASGQTYEKR
101: YITEWLKHER TCPKTKQVLS HRLWIPNHLI SDLITQWCLV NKYDHQKPSD ELVAELFTSD IEALLQRVSS SSSVADQIEA AKELRHQTKK FPNVRVFFVA
201: GIHDSITRLL SPLSTLDEAV DSSLELQENI VTALFNLSIL ESNKTVIAEN CLVIPLLTKS LKQGTDETRR NAAATLSSLS AIDSNKIIIG NSEAVKALID
301: LIEEGDLLAT KEATSTVFNL CIVLENKGKV VSAGLIHAAT KKIKAGSNVD ELLSLLALIS THNRAVEEMD KLGFIYDLFS ILRKPSSLLT GENAVVIVFN
401: MYDRNRDRSR LKVVGEEENQ HGTFTKLAKQ GSVRAARKAQ GILQWIKRFV TGKEPQRA
101: YITEWLKHER TCPKTKQVLS HRLWIPNHLI SDLITQWCLV NKYDHQKPSD ELVAELFTSD IEALLQRVSS SSSVADQIEA AKELRHQTKK FPNVRVFFVA
201: GIHDSITRLL SPLSTLDEAV DSSLELQENI VTALFNLSIL ESNKTVIAEN CLVIPLLTKS LKQGTDETRR NAAATLSSLS AIDSNKIIIG NSEAVKALID
301: LIEEGDLLAT KEATSTVFNL CIVLENKGKV VSAGLIHAAT KKIKAGSNVD ELLSLLALIS THNRAVEEMD KLGFIYDLFS ILRKPSSLLT GENAVVIVFN
401: MYDRNRDRSR LKVVGEEENQ HGTFTKLAKQ GSVRAARKAQ GILQWIKRFV TGKEPQRA
Arabidopsis Description
PUB46Putative U-box domain-containing protein 46 [Source:UniProtKB/Swiss-Prot;Acc:Q3E9F7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.