CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43686	Canola	plastid	97.28	97.28
CDX90186	Canola	mitochondrion	60.06	55.68
CDY43332	Canola	mitochondrion	60.51	55.63
CDX94661	Canola	plastid	58.85	54.71
CDY48332	Canola	mitochondrion, plastid	56.58	53.12
KRH11061	Soybean	mitochondrion, plastid	56.88	52.51
KRH21208	Soybean	mitochondrion	56.88	52.51
CDX99816	Canola	plastid	56.58	51.66
KRH42917	Soybean	mitochondrion	55.07	50.91
KRH59027	Soybean	mitochondrion	55.07	50.91
Solyc02g072080.1.1	Tomato	cytosol, mitochondrion	54.61	49.86
PGSC0003DMT400073254	Potato	cytosol	54.61	49.86
VIT_10s0003g01730.t01	Wine grape	mitochondrion	53.71	48.9
GSMUA_Achr2P15530_001	Banana	mitochondrion	41.91	41.97
GSMUA_Achr10P...	Banana	mitochondrion	28.14	41.15
GSMUA_Achr9P28820_001	Banana	mitochondrion	36.76	40.57
GSMUA_Achr7P09440_001	Banana	mitochondrion	38.73	40.13
TraesCS6B01G222200.1	Wheat	cytosol	24.96	39.38
Os02t0234300-01	Rice	cytosol	33.89	38.55
EES04812	Sorghum	plastid	41.6	37.72
Zm00001d053544_P001	Maize	mitochondrion, plastid	40.09	37.59
Zm00001d016225_P001	Maize	plastid	41.3	37.45
TraesCS6D01G180400.1	Wheat	plastid	39.03	35.59
TraesCS6A01G190700.1	Wheat	plastid	38.88	35.45
CDY28679	Canola	cytosol	12.86	32.32
HORVU6Hr1G041430.8	Barley	mitochondrion	39.03	31.31
CDX71307	Canola	cytosol	31.77	31.2
CDY31406	Canola	cytosol	31.77	31.16
CDY25764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	27.53	30.95
CDY12497	Canola	cytosol	27.53	30.49
CDX78273	Canola	cytosol	28.9	30.13
CDY21412	Canola	cytosol, endoplasmic reticulum	27.53	29.93
CDY04746	Canola	cytosol, endoplasmic reticulum	27.53	29.89
CDX96295	Canola	cytosol, plasma membrane	27.84	29.87
CDX72769	Canola	cytosol	27.38	29.58
CDY31736	Canola	cytosol	28.14	28.97
CDY04747	Canola	cytosol, golgi	19.21	28.8
CDX77213	Canola	cytosol	27.84	28.62
CDX68380	Canola	cytosol	23.0	28.57
CDX68379	Canola	cytosol	27.53	27.66
CDX99112	Canola	cytosol	27.08	27.33
CDX86080	Canola	cytosol	27.08	27.29
CDY32692	Canola	peroxisome	14.52	27.2
CDX91947	Canola	plastid	14.37	26.91
CDX74298	Canola	plastid	14.37	26.84
CDY02828	Canola	cytosol	14.22	26.55
CDY24520	Canola	cytosol	26.48	25.96
CDX74050	Canola	cytosol	17.85	25.88
CDY28059	Canola	cytosol	18.0	25.76
CDY71737	Canola	cytosol	18.0	25.76
CDY68037	Canola	cytosol	25.26	25.5
CDY08002	Canola	cytosol	17.4	25.27
CDX95193	Canola	cytosol	24.96	25.19
CDY54132	Canola	cytosol	25.87	25.15
CDY18649	Canola	cytosol, plastid	26.78	24.86
CDY68352	Canola	cytosol	17.1	24.78
CDX81323	Canola	cytosol, plastid	26.78	24.48
CDY38506	Canola	cytosol	16.79	24.34
CDX76873	Canola	cytosol, plastid	27.08	23.96
CDY04344	Canola	cytosol	11.5	23.82
CDY04342	Canola	cytosol	11.95	23.72
CDY55050	Canola	cytosol	24.66	23.42
CDX93411	Canola	mitochondrion	24.36	23.07
CDX90518	Canola	plastid	15.73	22.86
CDY57440	Canola	cytosol	22.69	22.76
CDY12838	Canola	cytosol	23.9	22.6
CDY09688	Canola	cytosol	15.28	22.25
CDX78262	Canola	cytosol	23.15	21.79
CDX73449	Canola	cytosol	23.0	21.59
CDY38931	Canola	cytosol	19.97	21.46
CDY02891	Canola	cytosol	23.75	21.3
CDX73439	Canola	plastid	28.9	21.2
CDY64696	Canola	cytosol, extracellular, mitochondrion, plastid	23.6	21.14
CDX70810	Canola	cytosol	13.77	19.28
CDY51235	Canola	extracellular, golgi	14.67	18.69
CDY46092	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	27.69	17.72
CDX70805	Canola	cytosol	14.67	6.29
CDY51234	Canola	cytosol	14.83	5.91

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078HJ19	UniProt:A0A078HJ19	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	EnsemblPlants:CDY37666	ProteinID:CDY37666	ProteinID:CDY37666.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00064557001
InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514	PFAM:PF04564
PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF76	SMART:SM00185	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EE9755	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

BnaA04g20020DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078HJ19]

Coordinates

chrLK032406:-:4395..6380

Molecular Weight (calculated)

73576.8 Da

IEP (calculated)

7.054

GRAVY (calculated)

-0.044

Length

661 amino acids

Sequence
(BLAST)

001: MATDSAMFAS SRRRQSPSLE AFLSPVNLSD VPLLQTLSST SSEILSCFSD VCFSFQRRNT RSLIRKVQVF AVLLQHLAPE SSLDPTAVLC FKELYLLLHH
101: SKFLLRYCAH SSKLWLLLQS PSLSSFFHDL SKDYSTLLDV FLPVDSLCLN DDVREQVQLL HMQHYVDDNN DETLRNRLFS FLDEFENGSV PNSEELRFFF
201: FEKLAIKDPT SYREEIEFLE EQIKSHGCDL DPTRSVINGF IDITRYVMFL LFKIEDGNEI KKQKKRLISE EIENTFTTTL PKDFICSISL NLMNDPVIIS
301: TGQTYDRTSI SRWIHQEGRS TCPKTGQKLV DLSFVPNLAL RHLTTLWCQV TGLSHDSPKE SLPKVFQTRA STEANKATLS ILVQNLAHGS ELAAGEIRVL
401: TRTVTETRTL IVEAGAIPYL RSLLKSQNAV AQENAVASIF NLSIDEANRS LIMEEHDCLE PIMSVLVSGL TMRAKEIAAA TLYTLSSVHD YKKAIANADG
501: CIEALALVLR NGTVRGKKDA VYALHSLWLH PDNYSLMVKR GGVSALVGAL GEEAVAEKVA WVLGVMATET LGAESIGREE SVVTGLMELM RCGRPRGKEK
601: AIATLLQLCT AGGAVVTEKV VKTPALAVLT RKLLLTGTDR AKRKAVSLSK VCKGCDQNTQ R

Best Arabidopsis Sequence Match ( AT1G29340.1 )
(BLAST)

001: MASAAIFSSL RRRRSPSLEA FLAPVDLSGV ALVQTLASIS SEVVSCFTSV RFSFQRKNAR SLIRKIEIFV VLFEFLVDSN WGSTTTRTRA RRRSKSSVSE
101: STALLCLKEL YLLLYRSKIL VDYCAQSSKL WLLLQNPSIS GYFHDLNQEI STLLDVLPVN DLGLSDDIRE QIELLQRQSR KARLYIDKND ESLRESFYSF
201: LDGFENGKIP SSVDLRMFFV EKLGIRDSKS CRSEIEFLEE QIVNHDGDLE PTGSVINGFV AITRYCRFLL FGFEEDGMEW WIENNPKKPR KGFVAQEIGD
301: TFITVPKDFV CPISLDLMTD PVIISTGQTY DRNSIARWIE EGHCTCPKTG QMLMDSRIVP NRALKNLIVQ WCTASGISYE SEFTDSPNES FASALPTKAA
401: VEANKATVSI LIKYLADGSQ AAQTVAAREI RLLAKTGKEN RAYIAEAGAI PHLCRLLTSE NAIAQENSVT AMLNLSIYEK NKSRIMEEGD CLESIVSVLV
501: SGLTVEAQEN AAATLFSLSA VHEYKKRIAI VDQCVEALAL LLQNGTPRGK KDAVTALYNL STHPDNCSRM IEGGGVSSLV GALKNEGVAE EAAGALALLV
601: RQSLGAEAIG KEDSAVAGLM GMMRCGTPRG KENAVAALLE LCRSGGAAVA EKVLRAPAIA GLLQTLLFTG TKRARRKAAS LARVFQRREN AAMRSGVYGF
701: VGNTNGNRDG GFTTDVSVPI SISISVPVL

Arabidopsis Description

PUB17RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WA68]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.