Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006451.1-P | Field mustard | cytosol | 86.51 | 96.15 |
| CDX70810 | Canola | cytosol | 72.83 | 80.08 |
| CDY38506 | Canola | cytosol | 47.59 | 54.17 |
| AT5G18320.1 | Thale cress | cytosol | 47.59 | 53.93 |
| CDY68352 | Canola | cytosol | 46.82 | 53.29 |
| AT5G18340.1 | Thale cress | nucleus | 44.12 | 50.22 |
| AT5G18330.1 | Thale cress | cytosol | 41.43 | 48.31 |
| PGSC0003DMT400011486 | Potato | cytosol | 22.93 | 33.33 |
| VIT_00s0524g00030.t01 | Wine grape | cytosol | 28.52 | 32.96 |
| VIT_04s0043g00840.t01 | Wine grape | cytosol | 28.13 | 32.09 |
| PGSC0003DMT400016998 | Potato | cytosol | 27.75 | 32.07 |
| Solyc09g056450.2.1 | Tomato | cytosol | 27.75 | 32.07 |
| GSMUA_Achr6P06560_001 | Banana | cytosol | 22.93 | 31.9 |
| GSMUA_Achr10P... | Banana | cytosol | 22.93 | 31.82 |
| CDX74050 | Canola | cytosol | 27.75 | 31.58 |
| CDY08002 | Canola | cytosol | 27.36 | 31.21 |
| KRH68828 | Soybean | cytosol | 25.43 | 30.7 |
| Solyc04g050780.1.1 | Tomato | cytosol | 25.24 | 30.39 |
| CDY28059 | Canola | cytosol | 26.98 | 30.3 |
| PGSC0003DMT400039084 | Potato | cytosol | 25.82 | 30.25 |
| KRG97080 | Soybean | cytosol, nucleus | 25.43 | 30.0 |
| CDY71737 | Canola | cytosol | 26.59 | 29.87 |
| KRG99581 | Soybean | cytosol | 26.2 | 29.5 |
| KRH46608 | Soybean | cytosol | 26.2 | 29.5 |
| KRG92593 | Soybean | cytosol | 25.05 | 29.35 |
| Solyc04g050770.1.1 | Tomato | cytosol | 25.05 | 29.35 |
| GSMUA_Achr9P01670_001 | Banana | cytosol | 26.2 | 29.18 |
| Os02t0488600-01 | Rice | cytosol, nucleus | 23.31 | 28.61 |
| TraesCS2D01G275400.1 | Wheat | nucleus | 25.05 | 28.26 |
| TraesCS2B01G294100.1 | Wheat | nucleus | 24.86 | 28.04 |
| TraesCS2A01G276400.1 | Wheat | nucleus | 24.86 | 28.04 |
| HORVU2Hr1G067610.6 | Barley | cytosol | 25.24 | 27.64 |
| Zm00001d016501_P001 | Maize | cytosol | 24.47 | 27.31 |
| CDX70805 | Canola | cytosol | 80.92 | 27.25 |
| Os04t0348400-01 | Rice | cytosol | 23.7 | 26.8 |
| EES06804 | Sorghum | cytosol | 23.89 | 26.72 |
| CDY28679 | Canola | cytosol | 12.91 | 25.48 |
| CDY51234 | Canola | cytosol | 70.91 | 22.21 |
| CDX74298 | Canola | plastid | 14.45 | 21.19 |
| CDY32692 | Canola | peroxisome | 14.26 | 20.96 |
| CDX91947 | Canola | plastid | 14.07 | 20.68 |
| CDY25764 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 23.12 | 20.41 |
| CDY02828 | Canola | cytosol | 13.87 | 20.34 |
| CDY12497 | Canola | cytosol | 22.93 | 19.93 |
| CDX68380 | Canola | cytosol | 20.42 | 19.92 |
| CDY21412 | Canola | cytosol, endoplasmic reticulum | 22.54 | 19.24 |
| CDY04746 | Canola | cytosol, endoplasmic reticulum | 22.54 | 19.21 |
| CDX99112 | Canola | cytosol | 23.89 | 18.93 |
| CDX78273 | Canola | cytosol | 23.12 | 18.93 |
| CDX86080 | Canola | cytosol | 23.51 | 18.6 |
| CDX68379 | Canola | cytosol | 23.12 | 18.24 |
| CDY31736 | Canola | cytosol | 22.54 | 18.22 |
| CDY04747 | Canola | cytosol, golgi | 15.41 | 18.14 |
| CDX77213 | Canola | cytosol | 22.16 | 17.88 |
| CDX96295 | Canola | cytosol, plasma membrane | 20.81 | 17.53 |
| CDX72769 | Canola | cytosol | 20.42 | 17.32 |
| CDX95193 | Canola | cytosol | 21.39 | 16.95 |
| CDY68037 | Canola | cytosol | 21.39 | 16.95 |
| CDX78262 | Canola | cytosol | 21.19 | 15.67 |
| CDX73449 | Canola | cytosol | 21.19 | 15.62 |
| CDY18649 | Canola | cytosol, plastid | 21.19 | 15.45 |
| CDX81323 | Canola | cytosol, plastid | 21.39 | 15.35 |
| CDY57440 | Canola | cytosol | 19.46 | 15.33 |
| CDY02891 | Canola | cytosol | 21.39 | 15.06 |
| CDY64696 | Canola | cytosol, extracellular, mitochondrion, plastid | 21.39 | 15.04 |
| CDY09688 | Canola | cytosol | 13.1 | 14.98 |
| CDY38931 | Canola | cytosol | 17.73 | 14.96 |
| CDX90518 | Canola | plastid | 13.1 | 14.95 |
| CDY43686 | Canola | plastid | 18.88 | 14.83 |
| CDY12838 | Canola | cytosol | 19.85 | 14.74 |
| CDX90186 | Canola | mitochondrion | 20.23 | 14.73 |
| CDX71307 | Canola | cytosol | 19.08 | 14.71 |
| CDY31406 | Canola | cytosol | 19.08 | 14.69 |
| CDY37666 | Canola | cytosol, plastid | 18.69 | 14.67 |
| CDY43332 | Canola | mitochondrion | 19.85 | 14.33 |
| CDX94661 | Canola | plastid | 19.46 | 14.21 |
| CDY48332 | Canola | mitochondrion, plastid | 19.27 | 14.2 |
| CDX76873 | Canola | cytosol, plastid | 20.42 | 14.19 |
| CDX99816 | Canola | plastid | 19.65 | 14.09 |
| CDX93411 | Canola | mitochondrion | 18.69 | 13.9 |
| CDX73439 | Canola | plastid | 23.89 | 13.76 |
| CDY55050 | Canola | cytosol | 18.3 | 13.65 |
| CDY24520 | Canola | cytosol | 15.41 | 11.87 |
| CDY54132 | Canola | cytosol | 15.41 | 11.76 |
| CDY46092 | Canola | endoplasmic reticulum, golgi, plasma membrane, plastid | 21.0 | 10.55 |
| CDY04344 | Canola | cytosol | 5.2 | 8.46 |
| CDY04342 | Canola | cytosol | 5.01 | 7.81 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078IJI8 | UniProt:A0A078IJI8 | InterPro:ARM-like |
| InterPro:ARM-type_fold | EnsemblPlants:CDY51235 | ProteinID:CDY51235 | ProteinID:CDY51235.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00002995001 | InterPro:IPR003613 | InterPro:IPR011989 |
| InterPro:IPR013083 | PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR23315 | PANTHER:PTHR23315:SF75 | SMART:SM00504 |
| SUPFAM:SSF48371 | SUPFAM:SSF57850 | SignalP:SignalP-noTM | UniPathway:UPA00143 | UniParc:UPI0004EE7AF7 | InterPro:Ubox_domain |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
BnaA03g07030DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078IJI8]
Coordinates
chrLK032977:+:42815..45264
Molecular Weight (calculated)
57619.7 Da
IEP (calculated)
5.332
GRAVY (calculated)
-0.066
Length
519 amino acids
Sequence
(BLAST)
(BLAST)
001: MMRKMKVVMI FKVLTMMSSL VDVVRFSFSG ALQLTVSSSF LSIANRNFPP SSFFPNSRVS RVSSFALSME ESTAANAATL RMELKKTMTE ILDDGGVSED
101: RGETDGALVA VDEAVRILNR LREVESKMPD SATSSSSPAS VLEVPKEFKC MLSRAIMSEP VVIASGQTYE KRYIQQWLMY KVTCPKTKEV LSHRLWVPNH
201: VIAELITEWC QVNKCDLPKP SDAPVGLFPD DIDLLLERIS SPSSVEDNTG AANELRRQTK RFADVPAFFV AEIPESITRL LTPLSALGED IDSNPGLQKD
301: IITALLYISC LEENKTAVAQ HPLAIPLLTK SLKQGIAKTR RNSAEALWEL SKLDSNKILI GNSETLEALV HVIKEDHFTA AIGAAYAVFQ LCCLPEKRDK
401: VVSEGLVPAL INRIKERSFV YIYFALLSLM TTQKGVIEEM EDLGFVDDMC SILRNTSCSV TEENGVSIVL LRMCGLSTGD RDRERTRLKL IKEEEDKYST
501: FTKFATQGSQ RTVAEAEAP
101: RGETDGALVA VDEAVRILNR LREVESKMPD SATSSSSPAS VLEVPKEFKC MLSRAIMSEP VVIASGQTYE KRYIQQWLMY KVTCPKTKEV LSHRLWVPNH
201: VIAELITEWC QVNKCDLPKP SDAPVGLFPD DIDLLLERIS SPSSVEDNTG AANELRRQTK RFADVPAFFV AEIPESITRL LTPLSALGED IDSNPGLQKD
301: IITALLYISC LEENKTAVAQ HPLAIPLLTK SLKQGIAKTR RNSAEALWEL SKLDSNKILI GNSETLEALV HVIKEDHFTA AIGAAYAVFQ LCCLPEKRDK
401: VVSEGLVPAL INRIKERSFV YIYFALLSLM TTQKGVIEEM EDLGFVDDMC SILRNTSCSV TEENGVSIVL LRMCGLSTGD RDRERTRLKL IKEEEDKYST
501: FTKFATQGSQ RTVAEAEAP
001: MADSTETNAD TLRRELQKVL TEILNDGGGN DRDETEAFSG VVKAIDEAVR ILTCLRKVES KIPESDISPV EVPKEFICTL SNTIMIEPVI IASGQTYEKR
101: YITEWLKHER TCPKTKQVLS HRLWIPNHLI SDLITQWCLV NKYDHQKPSD ELVAELFTSD IEALLQRVSS SSSVADQIEA AKELRHQTKK FPNVRVFFVA
201: GIHDSITRLL SPLSTLDEAV DSSLELQENI VTALFNLSIL ESNKTVIAEN CLVIPLLTKS LKQGTDETRR NAAATLSSLS AIDSNKIIIG NSEAVKALID
301: LIEEGDLLAT KEATSTVFNL CIVLENKGKV VSAGLIHAAT KKIKAGSNVD ELLSLLALIS THNRAVEEMD KLGFIYDLFS ILRKPSSLLT GENAVVIVFN
401: MYDRNRDRSR LKVVGEEENQ HGTFTKLAKQ GSVRAARKAQ GILQWIKRFV TGKEPQRA
101: YITEWLKHER TCPKTKQVLS HRLWIPNHLI SDLITQWCLV NKYDHQKPSD ELVAELFTSD IEALLQRVSS SSSVADQIEA AKELRHQTKK FPNVRVFFVA
201: GIHDSITRLL SPLSTLDEAV DSSLELQENI VTALFNLSIL ESNKTVIAEN CLVIPLLTKS LKQGTDETRR NAAATLSSLS AIDSNKIIIG NSEAVKALID
301: LIEEGDLLAT KEATSTVFNL CIVLENKGKV VSAGLIHAAT KKIKAGSNVD ELLSLLALIS THNRAVEEMD KLGFIYDLFS ILRKPSSLLT GENAVVIVFN
401: MYDRNRDRSR LKVVGEEENQ HGTFTKLAKQ GSVRAARKAQ GILQWIKRFV TGKEPQRA
Arabidopsis Description
PUB46Putative U-box domain-containing protein 46 [Source:UniProtKB/Swiss-Prot;Acc:Q3E9F7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.