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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 4
  • mitochondrion 2
  • cytosol 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Predotar:mitochondrion
PProwler:secretory
TargetP:plastid
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY48332 Canola mitochondrion, plastid 91.71 94.32
CDX90186 Canola mitochondrion 82.46 83.73
CDY43332 Canola mitochondrion 82.6 83.17
AT1G29340.1 Thale cress plastid 82.6 82.03
CDX94661 Canola plastid 79.83 81.29
KRH59027 Soybean mitochondrion 65.61 66.43
KRH21208 Soybean mitochondrion 65.61 66.34
KRH11061 Soybean mitochondrion, plastid 65.06 65.78
KRH42917 Soybean mitochondrion 64.09 64.9
Solyc02g072080.1.1 Tomato cytosol, mitochondrion 63.54 63.54
PGSC0003DMT400073254 Potato cytosol 63.12 63.12
VIT_10s0003g01730.t01 Wine grape mitochondrion 63.26 63.09
CDY43686 Canola plastid 51.93 56.88
CDY37666 Canola cytosol, plastid 51.66 56.58
GSMUA_Achr2P15530_001 Banana mitochondrion 48.76 53.48
GSMUA_Achr7P09440_001 Banana mitochondrion 47.1 53.45
TraesCS6B01G222200.1 Wheat cytosol 29.7 51.31
GSMUA_Achr9P28820_001 Banana mitochondrion 41.99 50.75
GSMUA_Achr10P... Banana mitochondrion 31.22 50.0
Os02t0234300-01 Rice cytosol 37.71 46.99
Zm00001d053544_P001 Maize mitochondrion, plastid 44.34 45.53
Zm00001d016225_P001 Maize plastid 45.44 45.13
EES04812 Sorghum plastid 45.03 44.72
TraesCS6D01G180400.1 Wheat plastid 42.4 42.34
TraesCS6A01G190700.1 Wheat plastid 42.4 42.34
HORVU6Hr1G041430.8 Barley mitochondrion 42.4 37.26
CDX71307 Canola cytosol 33.01 35.51
CDY31406 Canola cytosol 33.01 35.46
CDY28679 Canola cytosol 12.85 35.36
CDX78273 Canola cytosol 29.56 33.75
CDX68380 Canola cytosol 24.72 33.65
CDY25764 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 27.07 33.33
CDX68379 Canola cytosol 30.11 33.13
CDY12497 Canola cytosol 27.07 32.83
CDX86080 Canola cytosol 29.56 32.62
CDX99112 Canola cytosol 29.28 32.37
CDY04746 Canola cytosol, endoplasmic reticulum 27.07 32.18
CDX96295 Canola cytosol, plasma membrane 27.35 32.14
CDY21412 Canola cytosol, endoplasmic reticulum 26.93 32.07
CDX72769 Canola cytosol 26.66 31.54
CDX77213 Canola cytosol 27.21 30.64
CDY04747 Canola cytosol, golgi 18.51 30.39
CDY31736 Canola cytosol 26.93 30.37
CDY68037 Canola cytosol 27.07 29.92
CDX74298 Canola plastid 14.5 29.66
CDX95193 Canola cytosol 26.8 29.62
CDX91947 Canola plastid 14.36 29.46
CDY32692 Canola peroxisome 14.36 29.46
CDY71737 Canola cytosol 18.78 29.44
CDX74050 Canola cytosol 18.37 29.17
CDY02828 Canola cytosol 14.09 28.81
CDY28059 Canola cytosol 18.37 28.79
CDY08002 Canola cytosol 17.96 28.57
CDY68352 Canola cytosol 17.13 27.19
CDY18649 Canola cytosol, plastid 26.66 27.11
CDX76873 Canola cytosol, plastid 27.76 26.91
CDY38506 Canola cytosol 16.85 26.75
CDY24520 Canola cytosol 24.86 26.71
CDY54132 Canola cytosol 24.86 26.47
CDX81323 Canola cytosol, plastid 26.38 26.42
CDY57440 Canola cytosol 23.34 25.64
CDY12838 Canola cytosol 24.59 25.46
CDX90518 Canola plastid 15.75 25.05
CDY55050 Canola cytosol 23.76 24.71
CDX93411 Canola mitochondrion 23.62 24.5
CDY09688 Canola cytosol 15.33 24.45
CDX73449 Canola cytosol 23.34 24.01
CDX78262 Canola cytosol 23.2 23.93
CDY02891 Canola cytosol 24.31 23.88
CDY64696 Canola cytosol, extracellular, mitochondrion, plastid 24.31 23.85
CDX73439 Canola plastid 29.42 23.64
CDY04344 Canola cytosol 10.22 23.2
CDY04342 Canola cytosol 10.5 22.82
CDY38931 Canola cytosol 19.2 22.6
CDX70810 Canola cytosol 14.09 21.61
CDY51235 Canola extracellular, golgi 14.09 19.65
CDY46092 Canola endoplasmic reticulum, golgi, plasma membrane, plastid 27.49 19.26
CDX70805 Canola cytosol 16.02 7.53
CDY51234 Canola cytosol 15.47 6.76
Protein Annotations
Gene3D:1.25.10.10Gene3D:3.30.40.10MapMan:35.1GO:A0A078EFB1InterPro:ARM-likeInterPro:ARM-type_fold
InterPro:ArmadilloEnsemblPlants:CDX99816ProteinID:CDX99816ProteinID:CDX99816.1ncoils:CoilGO:GO:0003674
GO:GO:0003824GO:GO:0004842GO:GO:0005488GO:GO:0005515GO:GO:0006464GO:GO:0008150
GO:GO:0008152GO:GO:0009987GO:GO:0016567GO:GO:0016740GO:GO:0019538EnsemblPlantsGene:GSBRNA2T00108514001
InterPro:IPR000225InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083PFAM:PF00514PFAM:PF04564
PFscan:PS50176PFscan:PS51698PANTHER:PTHR23315PANTHER:PTHR23315:SF76SMART:SM00185SMART:SM00504
SUPFAM:SSF48371SUPFAM:SSF57850UniPathway:UPA00143UniParc:UPI0004EDB963InterPro:Ubox_domainInterPro:Znf_RING/FYVE/PHD
SEG:seg:::::
Description
BnaC05g22380D
Coordinates
chrLK031914:+:279806..282674
Molecular Weight (calculated)
79475.3 Da
IEP (calculated)
5.644
GRAVY (calculated)
0.024
Length
724 amino acids
Sequence
(BLAST)
001: MATAAIFSSL RRRRSPSLEA FLAPVDLSGV AVVQTLASIS SEVVSSSAAT RLSFQRRNAR SLLRKIEIFV VLFEFLVETR SPSSSTTALL CLKEFYLLIY
101: RSKILLEYEF YLLIYRSKIL LEYVAQSSNL WLLLQNPSIS GYFHDLSQEI STLLDVFPVS ELDLSDDIRE QIELLRRQSL KSRLYIDSND ESLRETFYSF
201: LYTFENGEIP SPTALRTFFV EKLGFKDSNS YRNEIEFLEE QIVNHDGELE PASSVINGFV AITRYSRFLL FGFEEDGLEW RIENHPKVGG GDTIVTQVPK
301: DFVCPISLDL MTDPVIVSTG QTYDRTSIAR WIEEGHCTCP KTGQTLIDSR IVPNRALKNL IVQWCTASGV AIESEFVSDS STNEGFVSAL PTKAAVEANK
401: ATVSILIQFL ADGSSEPAQT VAAREIRLLA KTGKDNRSFI AEAGAIPHLR RLLKSENAIA QENSVTAMLN LSIYEKNKSL IMEEDDCLEC IVSVLLSGLT
501: VEAQENAAAT LFSLSAVHEY KKRIAFTDHC VEALSSLLRN GTPRGKKDAV TALYNLSTHP DNCGRMIEGG GVSSLVVALK NDVVSEEAAG ALALLVRQSL
601: GAEAIGREEG AVTGLMGMMR CGTARGKENA VAALLELCRS GGAAAAERVL RAPAIAGLLQ TLLFTGTKRA RRKAASLARV FQRREHAAMR SGGYGFVVNV
701: NENRDGGNFT TDVSVPMSIS VPVL
Best Arabidopsis Sequence Match ( AT1G29340.1 )
(BLAST)
001: MASAAIFSSL RRRRSPSLEA FLAPVDLSGV ALVQTLASIS SEVVSCFTSV RFSFQRKNAR SLIRKIEIFV VLFEFLVDSN WGSTTTRTRA RRRSKSSVSE
101: STALLCLKEL YLLLYRSKIL VDYCAQSSKL WLLLQNPSIS GYFHDLNQEI STLLDVLPVN DLGLSDDIRE QIELLQRQSR KARLYIDKND ESLRESFYSF
201: LDGFENGKIP SSVDLRMFFV EKLGIRDSKS CRSEIEFLEE QIVNHDGDLE PTGSVINGFV AITRYCRFLL FGFEEDGMEW WIENNPKKPR KGFVAQEIGD
301: TFITVPKDFV CPISLDLMTD PVIISTGQTY DRNSIARWIE EGHCTCPKTG QMLMDSRIVP NRALKNLIVQ WCTASGISYE SEFTDSPNES FASALPTKAA
401: VEANKATVSI LIKYLADGSQ AAQTVAAREI RLLAKTGKEN RAYIAEAGAI PHLCRLLTSE NAIAQENSVT AMLNLSIYEK NKSRIMEEGD CLESIVSVLV
501: SGLTVEAQEN AAATLFSLSA VHEYKKRIAI VDQCVEALAL LLQNGTPRGK KDAVTALYNL STHPDNCSRM IEGGGVSSLV GALKNEGVAE EAAGALALLV
601: RQSLGAEAIG KEDSAVAGLM GMMRCGTPRG KENAVAALLE LCRSGGAAVA EKVLRAPAIA GLLQTLLFTG TKRARRKAAS LARVFQRREN AAMRSGVYGF
701: VGNTNGNRDG GFTTDVSVPI SISISVPVL
Arabidopsis Description
PUB17RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WA68]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.